RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SMG7Q92540 1137 aaKnown RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 MYLPFQ96A32 169 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 TMCO6Q96DC7 493 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CELF4Q9BZC1 486 aaKnown RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 OSBPL3Q9H4L5 887 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 MED11Q9P086 117 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CUX1P39880 1505 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 C5orf58C9J3I9 102 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 BOLA2-SMG1P6H3BVE0 249 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 FAM153BP0C7A2 387 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 MAGEA12P43365 314 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 RAB2AP61019 212 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 ACTR2P61160 394 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 DEFA6Q01524 100 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 TCIRG1Q13488 830 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 GALNT3Q14435 633 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 ZNF423Q2M1K9 1284 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 PDPK2PQ6A1A2 396 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 PALB2Q86YC2 1186 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 EID3Q8N140 333 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 PGBD4Q96DM1 585 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 PIGNO95427 931 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 PGK1P00558 417 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CDC25AP30304 524 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 COBLL1Q53SF7 1204 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 HES5Q5TA89 166 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CRTC3Q6UUV7 619 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 ANKRD13DQ6ZTN6 518 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 UNC13DQ70J99 1090 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 SATL1Q86VE3 508 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 TPH2Q8IWU9 490 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 PIK3R3Q92569 461 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 NXNL1Q96CM4 212 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 HES6Q96HZ4 224 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 FAXDC2Q96IV6 333 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CORO1BQ9BR76 489 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 THUMPD3Q9BV44 507 aaKnown RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 VANGL2Q9ULK5 521 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 NSD2O96028 1365 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 GTF2IP78347 998 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 CDK16Q00536 496 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 NAALADL2Q58DX5 795 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 SH3D19Q5HYK7 790 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 LDLRAP1Q5SW96 308 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 RIPOR1Q6ZS17 1223 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 SSX6Q7RTT6 188 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 LCORLQ8N3X6 602 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 MARCH10Q8NA82 808 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 PRKAG2Q9UGJ0 569 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 PTPRGP23470 1445 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 FLT1P17948 1338 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 MYO3BQ8WXR4 1341 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 POTEMA6NI47 508 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 C12orf71A8MTZ7 269 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 KATNA1O75449 491 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 EIF4A2Q14240 407 aaKnown RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 PSMD5Q16401 504 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 PAPD7Q5XG87 772 aaKnown RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 POTEHQ6S545 545 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 POTEGQ6S5H5 508 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 RNF135Q8IUD6 432 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 ZDHHC13Q8IUH4 622 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 SYNPOQ8N3V7 929 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 METTL6Q8TCB7 284 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 SMAD5Q99717 465 aaKnown RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 HNRNPABQ99729 332 aaKnown RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 SEMA6AQ9H2E6 1030 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 CPSF3Q9UKF6 684 aaKnown RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 GDAQ9Y2T3 454 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 DAPK1P53355 1430 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 OR6C70A6NIJ9 312 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 RBL1P28749 1068 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 FXR1P51114 621 aaKnown RBP eCLIP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 MYBPC3Q14896 1274 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 ZNF425Q6IV72 752 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 EPHX4Q8IUS5 362 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 SH3TC2Q8TF17 1288 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 TGFBRAP1Q8WUH2 860 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 AP3S1Q92572 193 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 ZNF560Q96MR9 790 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 HPS4Q9NQG7 708 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 CNOT7Q9UIV1 285 aaKnown RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 DUSP12Q9UNI6 340 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 UBA6A0AVT1 1052 aaPredicted RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 TM9SF1O15321 606 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 CHP2O43745 196 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 CYP2D6P10635 497 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 TGM2P21980 687 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 GRK3P35626 688 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 HNF4AP41235 474 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 RPP38P78345 283 aaKnown RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 STX4Q12846 297 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 NAB1Q13506 487 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 ALCAMQ13740 583 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 EZH2Q15910 746 aaKnown RBP9.25□□□□□ -0.93
COL6A3-210ENST00000473258 PLEKHG6Q3KR16 790 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 ATAD3CQ5T2N8 411 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 XKRXQ6PP77 449 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 FANCBQ8NB91 859 aa9.25□□□□□ -0.93
COL6A3-210ENST00000473258 PUS3Q9BZE2 481 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms