RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 DSG1Q02413 1049 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 KRT17Q04695 432 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 ELF2Q15723 593 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 SLC8B1Q6J4K2 584 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 FAM117BQ6P1L5 589 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 C16orf59Q7L2K0 433 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 TMEM173Q86WV6 379 aaPredicted RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 PSTKQ8IV42 348 aaKnown RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 MAP7D3Q8IWC1 876 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 ARHGAP18Q8N392 663 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 NOA1Q8NC60 698 aaKnown RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 FBXO22Q8NEZ5 403 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 CCDC26Q8TAB7 109 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 CLEC4CQ8WTT0 213 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 FAM172AQ8WUF8 416 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 BCL7CQ8WUZ0 217 aaPredicted RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 LBHD1Q9BQE6 289 aaPredicted RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 ZBED2Q9BTP6 218 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 C11orf84Q9BUA3 381 aaPredicted RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 NGRNQ9NPE2 291 aaKnown RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 RBM12Q9NTZ6 932 aaKnown RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 ARGLU1Q9NWB6 273 aaPredicted RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 EHD2Q9NZN4 543 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 RWDD3Q9Y3V2 267 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 OBSL1O75147 1896 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 CEP290O15078 2479 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 MTMR11A4FU01 709 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 ZNF487B1APH4 448 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 MDM4O15151 490 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 ENDOD1O94919 500 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 TJP3O95049 919 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 F9P00740 461 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 URODP06132 367 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 OR4Q2P0C623 313 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 CYP2F1P24903 491 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 CHRNA3P32297 505 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 GJC1P36383 396 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 PBX3P40426 434 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 TUFMP49411 452 aaKnown RBP13.4□□□□□ -0.26
VPS13D-205ENST00000473099 CACNA2D1P54289 1103 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 AIF1P55008 147 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 PDK2Q15119 407 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 TAF5Q15542 800 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 CDO1Q16878 200 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 DCAF6Q58WW2 860 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 TFDP3Q5H9I0 405 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 TPGS2Q68CL5 300 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 TRNP1Q6NT89 227 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 MAATS1Q7Z4T9 603 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 SCN4BQ8IWT1 228 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 DEFB106AQ8N104 65 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 NUP93Q8N1F7 819 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 CMASQ8NFW8 434 aaPredicted RBP13.4□□□□□ -0.26
VPS13D-205ENST00000473099 RIN2Q8WYP3 895 aaPredicted RBP13.4□□□□□ -0.26
VPS13D-205ENST00000473099 NT5C3BQ969T7 300 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 PGAP3Q96FM1 320 aaPredicted RBP13.4□□□□□ -0.26
VPS13D-205ENST00000473099 SPATA17Q96L03 361 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 CFAP57Q96MR6 1250 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 SLITRK1Q96PX8 696 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 NPY6RQ99463 290 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 RAD9AQ99638 391 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 OSBPL8Q9BZF1 889 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 TMEM30AQ9NV96 361 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 SMARCAL1Q9NZC9 954 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.4□□□□□ -0.26
VPS13D-205ENST00000473099 MAFFQ9ULX9 164 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 SLC4A7Q9Y6M7 1214 aa13.4□□□□□ -0.26
VPS13D-205ENST00000473099 V9GYY5 206 aaPredicted RBP13.4□□□□□ -0.26
VPS13D-205ENST00000473099 DOCK4Q8N1I0 1966 aa13.4□□□□□ -0.27
VPS13D-205ENST00000473099 LRRD1A4D1F6 860 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 H0YGN5 161 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 TNFRSF10BO14763 440 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 PHF2O75151 1096 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 USP17L7P0C7H9 530 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 NDUFV1P49821 464 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 SULT1E1P49888 294 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 SLC5A3P53794 718 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 ATP11AP98196 1134 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 DHX34Q14147 1143 aaKnown RBP13.39□□□□□ -0.27
VPS13D-205ENST00000473099 CYP1B1Q16678 543 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 C15orf59Q2T9L4 293 aaPredicted RBP13.39□□□□□ -0.27
VPS13D-205ENST00000473099 DAB2IPQ5VWQ8 1189 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 WDR93Q6P2C0 686 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 SPOCD1Q6ZMY3 1216 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 GPRIN1Q7Z2K8 1008 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 ARFGAP1Q8N6T3 406 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 C12orf50Q8NA57 414 aaPredicted RBP13.39□□□□□ -0.27
VPS13D-205ENST00000473099 SP7Q8TDD2 431 aaPredicted RBP13.39□□□□□ -0.27
VPS13D-205ENST00000473099 CLP1Q92989 425 aaKnown RBP13.39□□□□□ -0.27
VPS13D-205ENST00000473099 RHOBTB2Q9BYZ6 727 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 FRMD8P1Q9BZ68 369 aaPredicted RBP13.39□□□□□ -0.27
VPS13D-205ENST00000473099 ZWILCHQ9H900 591 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 PRDM16Q9HAZ2 1276 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 ABCC13Q9NSE7 274 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 AFF4Q9UHB7 1163 aaKnown RBP13.39□□□□□ -0.27
VPS13D-205ENST00000473099 FEZ2Q9UHY8 353 aaPredicted RBP13.39□□□□□ -0.27
VPS13D-205ENST00000473099 SCML2Q9UQR0 700 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 CDY1Q9Y6F8 540 aa13.39□□□□□ -0.27
VPS13D-205ENST00000473099 YJEFN3A6XGL0 299 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms