RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 REXO4Q9GZR2 422 aaKnown RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 EXTL3O43909 919 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 F9P00740 461 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 GSTT1P30711 240 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 RPL5P46777 297 aaKnown RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 CASP12Q6UXS9 341 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 LRRC34Q8IZ02 419 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 OSBPL11Q9BXB4 747 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 ARID1BQ8NFD5 2236 aaPredicted RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 EEF2KO00418 725 aaKnown RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 KLHL18O94889 574 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 PDGFRAP16234 1089 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 INO80DQ53TQ3 878 aaPredicted RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 CD302Q8IX05 232 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 MUC13Q9H3R2 512 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 PCDH9Q9HC56 1237 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 KLHL28Q9NXS3 571 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 ATXN10Q9UBB4 475 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 COMTP21964 271 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 ME2P23368 584 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 MTTPP55157 894 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 CDK16Q00536 496 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 OTUD4Q01804 1114 aaKnown RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 NFX1Q12986 1120 aaKnown RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 ARHGEF7Q14155 803 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 IFNEQ86WN2 208 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 PDPRQ8NCN5 879 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 NUAK2Q9H093 628 aa13.71□□□□□ -0.21
COL6A3-209ENST00000472056 ZNF608Q9ULD9 1512 aaPredicted RBP13.71□□□□□ -0.21
COL6A3-209ENST00000472056 CYP2D6P10635 497 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 SH3BP5LQ7L8J4 393 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 STX12Q86Y82 276 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 SNX31Q8N9S9 440 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 NOA1Q8NC60 698 aaKnown RBP13.71□□□□□ -0.22
COL6A3-209ENST00000472056 TMEM47Q9BQJ4 181 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 SEC24CP53992 1094 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 RBM43Q6ZSC3 357 aaKnown RBP13.71□□□□□ -0.22
COL6A3-209ENST00000472056 C6orf62Q9GZU0 229 aaPredicted RBP13.71□□□□□ -0.22
COL6A3-209ENST00000472056 AHSPQ9NZD4 102 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 CLCA2Q9UQC9 943 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 CCDC154A6NI56 674 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 TBC1D12O60347 775 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 CCNG2Q16589 344 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF618Q5T7W0 954 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 BROXQ5VW32 411 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 MRPL39Q9NYK5 338 aaKnown RBP13.71□□□□□ -0.22
COL6A3-209ENST00000472056 CYP39A1Q9NYL5 469 aa13.71□□□□□ -0.22
COL6A3-209ENST00000472056 LOC102724428A0A0B4J2F2 783 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 LARGE1O95461 756 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 SIK1P57059 783 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 ABRAXAS1Q6UWZ7 409 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 NEK6Q9HC98 313 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 MOV10Q9HCE1 1003 aaKnown RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 DYNC1LI2O43237 492 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 PEX1O43933 1283 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 NPM3O75607 178 aaKnown RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 SERPINE1P05121 402 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 GPD1P21695 349 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 SKP1P63208 163 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 DDR1Q08345 913 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 ZNF746Q6NUN9 644 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 KLHL24Q6TFL4 600 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 SAMD3Q8N6K7 520 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 TDRD5Q8NAT2 981 aaKnown RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 TSEN34Q9BSV6 310 aaKnown RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 A0A087WWV3 80 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 ATP9BO43861 1147 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 GUCY1A2P33402 732 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 MTF1Q14872 753 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 ACAD10Q6JQN1 1059 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 KLHL23Q8NBE8 558 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 GDPD5Q8WTR4 605 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 SNRNP27Q8WVK2 155 aaKnown RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 RNF112Q9ULX5 631 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 RPS6KL1Q9Y6S9 549 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 ABCA6Q8N139 1617 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 UBOX5O94941 541 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 RAB2AP61019 212 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 SPIRE1Q08AE8 756 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 TMEM26Q6ZUK4 368 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 ATG16L2Q8NAA4 619 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 MYDGFQ969H8 173 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 GPAMQ9HCL2 828 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 UBE2QL1A1L167 161 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 CYP26A1O43174 497 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 PSMD4P55036 377 aaKnown RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 SV2CQ496J9 727 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 MTDHQ86UE4 582 aaKnown RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 RTKN2Q8IZC4 609 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 BORCS5Q969J3 196 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 FAM111AQ96PZ2 611 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 PRKD2Q9BZL6 878 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 ARAP3Q8WWN8 1544 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 MARK2Q7KZI7 788 aaKnown RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 ACTRT2Q8TDY3 377 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 GANCQ8TET4 914 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 CENPIQ92674 756 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-209ENST00000472056 C9orf72Q96LT7 481 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 SLC25A23Q9BV35 468 aa13.7□□□□□ -0.22
COL6A3-209ENST00000472056 RNPEPQ9H4A4 650 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms