RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ARL14EPQ8N8R7 260 aaPredicted RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 MCPH1Q8NEM0 835 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 OSCP1Q8WVF1 389 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 ACDQ96AP0 544 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 SENP8Q96LD8 212 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 CEP63Q96MT8 703 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 CCDC43Q96MW1 224 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 HNRNPABQ99729 332 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 TCHPQ9BT92 498 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 PI4K2AQ9BTU6 479 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 ZCCHC2Q9C0B9 1178 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 SLC6A17Q9H1V8 727 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 BRD7Q9NPI1 651 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 TOPORSQ9NS56 1045 aaPredicted RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 NDFIP2Q9NV92 336 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 SLC38A7Q9NVC3 462 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 BTBD3Q9Y2F9 522 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 FNDC3AQ9Y2H6 1198 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 PCDHGC4Q9Y5F7 938 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 SLCO1B1Q9Y6L6 691 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 MGAQ8IWI9 3026 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 ARID1BQ8NFD5 2236 aaPredicted RBP5.7□□□□□ -1.5
PTPN4-209ENST00000469511 A0A087WV48 116 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 TCRBV21S2A2A0A5A6 115 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 TTC26A0AVF1 554 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 ARHGEF35A5YM69 484 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 CCDC169A6NNP5 214 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 BTBD18B2RXH4 712 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 E9PMD0 336 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 SLC16A4O15374 487 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 CYP17A1P05093 508 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 MCF2P10911 925 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 IFNAR2P48551 515 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 LILRA4P59901 499 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 RPL6Q02878 288 aaKnown RBP5.7□□□□□ -1.5
PTPN4-209ENST00000469511 TNP2Q05952 138 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 SCRN1Q12765 414 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 MYO1EQ12965 1108 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 MYBPC2Q14324 1141 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 PDGFRLQ15198 375 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 SAFBQ15424 915 aaKnown RBP eCLIP5.7□□□□□ -1.5
PTPN4-209ENST00000469511 TRIP4Q15650 581 aaPredicted RBP5.7□□□□□ -1.5
PTPN4-209ENST00000469511 DDR2Q16832 855 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 GALNT17Q6IS24 598 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 CC2D1AQ6P1N0 951 aaPredicted RBP5.7□□□□□ -1.5
PTPN4-209ENST00000469511 USP37Q86T82 979 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 ITIH5Q86UX2 942 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 C11orf74Q86VG3 221 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 FBXL16Q8N461 479 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 CPA6Q8N4T0 437 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 SH3RF2Q8TEC5 729 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 FAM84AQ96KN4 292 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 NACC1Q96RE7 527 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 UBL7Q96S82 380 aaPredicted RBP5.7□□□□□ -1.5
PTPN4-209ENST00000469511 ACOX2Q99424 681 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 RUSC1Q9BVN2 902 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 SEMA4CQ9C0C4 833 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 ZCWPW1Q9H0M4 648 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 BHMT2Q9H2M3 363 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 PRORYQ9H606 182 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 PRDM16Q9HAZ2 1276 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 TRPC7Q9HCX4 862 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 CUEDC1Q9NWM3 386 aaPredicted RBP5.7□□□□□ -1.5
PTPN4-209ENST00000469511 ABI2Q9NYB9 513 aaPredicted RBP5.7□□□□□ -1.5
PTPN4-209ENST00000469511 GCNT4Q9P109 453 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 BCCIPQ9P287 314 aaKnown RBP eCLIP5.7□□□□□ -1.5
PTPN4-209ENST00000469511 ARHGAP28Q9P2N2 729 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 PCOLCE2Q9UKZ9 415 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 CKAP5Q14008 2032 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 DOCK9Q9BZ29 2069 aa5.7□□□□□ -1.5
PTPN4-209ENST00000469511 IGHV1OR15-9A0A0B4J2B8 117 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 J3QKU1 62 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 NEFLP07196 543 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 HMGB1P09429 215 aaKnown RBP5.69□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF16P17020 682 aaPredicted RBP5.69□□□□□ -1.5
PTPN4-209ENST00000469511 TYMPP19971 482 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 CYP2F1P24903 491 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 RDXP35241 583 aaKnown RBP5.69□□□□□ -1.5
PTPN4-209ENST00000469511 TUFMP49411 452 aaKnown RBP5.69□□□□□ -1.5
PTPN4-209ENST00000469511 EFNA5P52803 228 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 FAM160A1Q05DH4 1040 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 KDSRQ06136 332 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 GRIK2Q13002 908 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 KRT32Q14532 448 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF268Q14587 947 aaPredicted RBP5.69□□□□□ -1.5
PTPN4-209ENST00000469511 ENOX2Q16206 610 aaKnown RBP5.69□□□□□ -1.5
PTPN4-209ENST00000469511 TAF12Q16514 161 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 PLEKHG6Q3KR16 790 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 CCDC157Q569K6 752 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 WSCD1Q658N2 575 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 ARMCX5Q6P1M9 558 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 RHBDF2Q6PJF5 856 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 MPZL3Q6UWV2 235 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 KCNK18Q7Z418 384 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 TRIML1Q8N9V2 468 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 BAHD1Q8TBE0 780 aaPredicted RBP5.69□□□□□ -1.5
PTPN4-209ENST00000469511 WHAMMQ8TF30 809 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 WBP2Q969T9 261 aa5.69□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF837Q96EG3 531 aaPredicted RBP5.69□□□□□ -1.5
PTPN4-209ENST00000469511 IFT74Q96LB3 600 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms