RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 USP24Q9UPU5 2620 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 MYOFQ9NZM1 2061 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 DCDC2BA2VCK2 349 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 FAM200BP0CF97 657 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 ADH5P11766 374 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 SLC6A11P48066 632 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 SEC13P55735 322 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 MRPS21P82921 87 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 ADAM9Q13443 819 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 ZCWPW2Q504Y3 356 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 C2orf27AQ580R0 203 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 TSTD1Q8NFU3 115 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 TAS1R2Q8TE23 839 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 TWNKQ96RR1 684 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 PNKPQ96T60 521 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 HNRNPABQ99729 332 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 MMP17Q9ULZ9 603 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 SH3BP1Q9Y3L3 701 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 PCDHGA5Q9Y5G8 931 aa17.53■□□□□ 0.4
CCDC28B-204ENST00000469003 APODP05090 189 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 ZNF806P0C7X5 589 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 ADORA2BP29275 332 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 MCCD1P59942 119 aaPredicted RBP17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 EDRF1Q3B7T1 1238 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 PLK5Q496M5 336 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 LY6G5CQ5SRR4 150 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 C12orf40Q86WS4 652 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 CYFIP2Q96F07 1278 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 CCDC34Q96HJ3 373 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 NT5C1AQ9BXI3 368 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 NIF3L1Q9GZT8 377 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 NACA2Q9H009 215 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 GDPD2Q9HCC8 539 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 TMEM8AQ9HCN3 771 aa17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 TLR8Q9NR97 1041 aaKnown RBP17.52■□□□□ 0.4
CCDC28B-204ENST00000469003 A0A0A0MRY4 1105 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 ANTXRLA6NF34 631 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 GDF9O60383 454 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 TLR5O60602 858 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 CILPO75339 1184 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 KAT7O95251 611 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 GTF2H1P32780 548 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 PGFP49763 221 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 DGKEP52429 567 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 GAD2Q05329 585 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 MESP2Q0VG99 397 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 HSF5Q4G112 596 aaPredicted RBP17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 CLEC20AQ6ZU45 233 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 CCDC150Q8NCX0 1101 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 DUSP15Q9H1R2 295 aaPredicted RBP17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 MMRN2Q9H8L6 949 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 PNPLA8Q9NP80 782 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 ARHGEF4Q9NR80 690 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 SCML2Q9UQR0 700 aa17.51■□□□□ 0.39
CCDC28B-204ENST00000469003 HHLA1C9JL84 531 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 HOXC11O43248 304 aaPredicted RBP17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 RHOBTB1O94844 696 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 CHRM1P11229 460 aaPredicted RBP17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 GRIA2P42262 883 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 SF3A2Q15428 464 aaKnown RBP17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 ELF2Q15723 593 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 CCDC6Q16204 474 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 CRY1Q16526 586 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 AASDHQ4L235 1098 aaPredicted RBP17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 PLA2G2CQ5R387 149 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 KRT39Q6A163 491 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 GPRIN1Q7Z2K8 1008 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 RASSF3Q86WH2 238 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 SFTPA1Q8IWL2 248 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 BBS7Q8IWZ6 715 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 CCDC33Q8N5R6 958 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 C12orf50Q8NA57 414 aaPredicted RBP17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 WHAMMQ8TF30 809 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 CNOT6LQ96LI5 555 aaKnown RBP17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 DNAI2Q9GZS0 605 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 CYLDQ9NQC7 956 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 SPHK2Q9NRA0 654 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 PCDHA5Q9Y5H7 936 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 GTF3C3Q9Y5Q9 886 aa17.5■□□□□ 0.39
CCDC28B-204ENST00000469003 SDK1Q7Z5N4 2213 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 DCLK1O15075 740 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 KLF8O95600 359 aaPredicted RBP17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 IRF1P10914 325 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 CD58P19256 250 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 TIE1P35590 1138 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 MPLP40238 635 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 TNFRSF4P43489 277 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 LIMK1P53667 647 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 KDSRQ06136 332 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 USP39Q53GS9 565 aaKnown RBP17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 BTBD8Q5XKL5 378 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 HTR3DQ70Z44 454 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 C11orf74Q86VG3 221 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 ETFBKMTQ8IXQ9 262 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 SMYD4Q8IYR2 804 aaPredicted RBP17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 PHTF2Q8N3S3 785 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 ALLCQ8N6M5 410 aa17.49■□□□□ 0.39
CCDC28B-204ENST00000469003 IL17RCQ8NAC3 791 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms