RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 GOLGA8DPQ0D2H9 430 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 SIM2Q14190 667 aaPredicted RBP20.14■□□□□ 0.81
COL7A1-207ENST00000467985 DHCR24Q15392 516 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 CBWD6Q4V339 395 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 CBWD3Q5JTY5 395 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 CBWD5Q5RIA9 395 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 NAIF1Q69YI7 327 aaPredicted RBP20.14■□□□□ 0.81
COL7A1-207ENST00000467985 PKN3Q6P5Z2 889 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 FOXR2Q6PJQ5 311 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 TMEM176AQ96HP8 235 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 MAN1B1Q9UKM7 699 aa20.14■□□□□ 0.81
COL7A1-207ENST00000467985 DNAH14Q0VDD8 3507 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 TRIM49BA6NDI0 452 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 HHLA1C9JL84 531 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 HRO43593 1189 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 ATP5C1P36542 298 aaKnown RBP20.13■□□□□ 0.81
COL7A1-207ENST00000467985 OPRD1P41143 372 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 ID4P47928 161 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 PSEN1P49768 467 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 SLC8A3P57103 927 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 YWHAEP62258 255 aaKnown RBP20.13■□□□□ 0.81
COL7A1-207ENST00000467985 ZNF394Q53GI3 561 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 PPP1R26Q5T8A7 1209 aaPredicted RBP20.13■□□□□ 0.81
COL7A1-207ENST00000467985 PRR23BQ6ZRT6 265 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 SYT13Q7L8C5 426 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 TADA2BQ86TJ2 420 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 RPLP0P6Q8NHW5 317 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 SLC35C1Q96A29 364 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 UBXN6Q9BZV1 441 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 CYLDQ9NQC7 956 aa20.13■□□□□ 0.81
COL7A1-207ENST00000467985 MYO16Q9Y6X6 1858 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 BICDL2A1A5D9 508 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.12■□□□□ 0.81
COL7A1-207ENST00000467985 RETP07949 1114 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 ADH5P11766 374 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 KIF11P52732 1056 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 KLHDC10Q6PID8 442 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 RHBDF2Q6PJF5 856 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 CEP68Q76N32 757 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 GPRIN1Q7Z2K8 1008 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 SLC4A11Q8NBS3 891 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 EZH1Q92800 747 aaPredicted RBP20.12■□□□□ 0.81
COL7A1-207ENST00000467985 TATDN2Q93075 761 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 JAKMIP2Q96AA8 810 aa20.12■□□□□ 0.81
COL7A1-207ENST00000467985 CYP26A1O43174 497 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 LRP3O75074 770 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 TBXAS1P24557 533 aaPredicted RBP20.11■□□□□ 0.81
COL7A1-207ENST00000467985 RAD23BP54727 409 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 GAD2Q05329 585 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 CETN1Q12798 172 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 CUL2Q13617 745 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 MORC3Q14149 939 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 GAB4Q2WGN9 574 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 PREPLQ4J6C6 727 aaPredicted RBP20.11■□□□□ 0.81
COL7A1-207ENST00000467985 ARHGAP17Q68EM7 881 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 ISM2Q6H9L7 571 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 CCDC186Q7Z3E2 898 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 ZNF276Q8N554 614 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 GBP4Q96PP9 640 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 CDK5RAP1Q96SZ6 601 aaKnown RBP20.11■□□□□ 0.81
COL7A1-207ENST00000467985 PNKPQ96T60 521 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 ARID3AQ99856 593 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 LSM7Q9UK45 103 aaKnown RBP20.11■□□□□ 0.81
COL7A1-207ENST00000467985 ATG2BQ96BY7 2078 aa20.11■□□□□ 0.81
COL7A1-207ENST00000467985 K7EQS6 105 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 SCAMP3O14828 347 aaKnown RBP20.1■□□□□ 0.81
COL7A1-207ENST00000467985 PMM2O15305 246 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 CD44P16070 742 aaKnown RBP20.1■□□□□ 0.81
COL7A1-207ENST00000467985 SDHBP21912 280 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 PGFP49763 221 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 FOXK2Q01167 660 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 DMC1Q14565 340 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 LPAL2Q16609 132 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 CCDC40Q4G0X9 1142 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 BTBD8Q5XKL5 378 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 HTR3DQ70Z44 454 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.1■□□□□ 0.81
COL7A1-207ENST00000467985 ANKRD52Q8NB46 1076 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 GAB3Q8WWW8 586 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 KLF16Q9BXK1 252 aaPredicted RBP20.1■□□□□ 0.81
COL7A1-207ENST00000467985 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.1■□□□□ 0.81
COL7A1-207ENST00000467985 CLIC5Q9NZA1 410 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 DNMT3LQ9UJW3 386 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 USP3Q9Y6I4 520 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 KIAA1549LQ6ZVL6 1849 aa20.1■□□□□ 0.81
COL7A1-207ENST00000467985 A0A1W2PQH9 124 aa20.09■□□□□ 0.81
COL7A1-207ENST00000467985 PPP1R3GB7ZBB8 358 aa20.09■□□□□ 0.81
COL7A1-207ENST00000467985 HOXC11O43248 304 aaPredicted RBP20.09■□□□□ 0.81
COL7A1-207ENST00000467985 GADD45BO75293 160 aaPredicted RBP20.09■□□□□ 0.81
COL7A1-207ENST00000467985 RPP40O75818 363 aaKnown RBP20.09■□□□□ 0.81
COL7A1-207ENST00000467985 APBB3O95704 486 aa20.09■□□□□ 0.81
COL7A1-207ENST00000467985 APODP05090 189 aa20.09■□□□□ 0.81
COL7A1-207ENST00000467985 IRF1P10914 325 aa20.09■□□□□ 0.81
COL7A1-207ENST00000467985 RARGP13631 454 aa20.09■□□□□ 0.81
COL7A1-207ENST00000467985 FMO5P49326 533 aa20.09■□□□□ 0.81
COL7A1-207ENST00000467985 MRPS21P82921 87 aaKnown RBP20.09■□□□□ 0.81
COL7A1-207ENST00000467985 LMNB2Q03252 620 aa20.09■□□□□ 0.81
COL7A1-207ENST00000467985 SRSF5Q13243 272 aaKnown RBP20.09■□□□□ 0.81
COL7A1-207ENST00000467985 LY6G5CQ5SRR4 150 aa20.09■□□□□ 0.81
COL7A1-207ENST00000467985 KLHL10Q6JEL2 608 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms