RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PSMG2Q969U7 264 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 CNOT6LQ96LI5 555 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 FUCA2Q9BTY2 467 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 XYLT2Q9H1B5 865 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 SCUBE2Q9NQ36 999 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 CELSR3Q9NYQ7 3312 aa12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 URB1O60287 2271 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-206ENST00000466342 ASS1P00966 412 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 DRD1P21728 446 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 WEE1P30291 646 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 FMO5P49326 533 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 DHPSP49366 369 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 TNNC1P63316 161 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 AMPD2Q01433 879 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 RUNX3Q13761 415 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 DMC1Q14565 340 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 VEPH1Q14D04 833 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 NFE2Q16621 373 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 SOWAHAQ2M3V2 549 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 SGSM1Q2NKQ1 1148 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 ZNF699Q32M78 642 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 FBXO43Q4G163 708 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 ANO6Q4KMQ2 910 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 CBWD6Q4V339 395 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 TRIM61Q5EBN2 209 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 CBWD3Q5JTY5 395 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 CBWD5Q5RIA9 395 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 LIMS2Q7Z4I7 341 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 LRRTM3Q86VH5 581 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 PDCL2Q8N4E4 241 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 TAS1R2Q8TE23 839 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 TAF4BQ92750 862 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 ACBD6Q9BR61 282 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 IMPG2Q9BZV3 1241 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 FBRSL1Q9HCM7 1045 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 GKN1Q9NS71 199 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 L1RE1Q9UN81 338 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 NFE2L3Q9Y4A8 694 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 GON4LQ3T8J9 2241 aa12.66□□□□□ -0.38
SQSTM1-206ENST00000466342 PMM2O15305 246 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 CLSTN1O94985 981 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 HAPLN1P10915 354 aaPredicted RBP12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 ENGP17813 658 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 MAPK8P45983 427 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 LHX1P48742 406 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 GALK1P51570 392 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 FAM193AP78312 1265 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 MYL7Q01449 175 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 TSPY1Q01534 308 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 MYL5Q02045 173 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 KCNH2Q12809 1159 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 WDR72Q3MJ13 1102 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 ZSCAN23Q3MJ62 389 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 MGAT5BQ3V5L5 792 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 ZNF667Q5HYK9 610 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 GAREM2Q75VX8 874 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 ADGRF2Q8IZF7 708 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 TTC9BQ8N6N2 239 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 FBXL13Q8NEE6 735 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 RPLP0P6Q8NHW5 317 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 CHFRQ96EP1 664 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 MMS19Q96T76 1030 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 FAM83CQ9BQN1 747 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 NAT10Q9H0A0 1025 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 ATXN3LQ9H3M9 355 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 SAMSN1Q9NSI8 373 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 MAGEC2Q9UBF1 373 aaPredicted RBP12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 NXF1Q9UBU9 619 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 COQ4Q9Y3A0 265 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 PCDHB5Q9Y5E4 795 aa12.65□□□□□ -0.38
SQSTM1-206ENST00000466342 TENM4Q6N022 2769 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 PLXND1Q9Y4D7 1925 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 GABRDO14764 452 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 P4HA2O15460 535 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 TACC1O75410 805 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 SOAT2O75908 522 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 AFPP02771 609 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 FAM163BP0C2L3 166 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 P4HA1P13674 534 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 MTIF2P46199 727 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 NOP14P78316 857 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 HNRNPDQ14103 355 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 ARHGAP15Q53QZ3 475 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 GPR158Q5T848 1215 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 SLC23A3Q6PIS1 610 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 CREBRFQ8IUR6 639 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 CCDC150Q8NCX0 1101 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 KBTBD7Q8WVZ9 684 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 SEMA4DQ92854 862 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 ACDQ96AP0 544 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 SEPT5Q99719 369 aaPredicted RBP12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 BPIFA3Q9BQP9 254 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 PI4K2AQ9BTU6 479 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 HPS4Q9NQG7 708 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 RAB20Q9NX57 234 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 DDX43Q9NXZ2 648 aaKnown RBP12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 ZMYM5Q9UJ78 669 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 RAXQ9Y2V3 346 aa12.64□□□□□ -0.39
SQSTM1-206ENST00000466342 KALRNO60229 2985 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms