RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 KLRC4O43908 158 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 PCSK1P29120 753 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 KCNT1Q5JUK3 1230 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 STYK1Q6J9G0 422 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 SPATA20Q8TB22 786 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 TAAR1Q96RJ0 339 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 NCKIPSDQ9NZQ3 722 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 MROH2AA6NES4 1674 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 FRMPD4Q14CM0 1322 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 A0A0U1RQJ8 604 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 MAP3K6O95382 1288 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 ITGB3P05106 788 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 RBP1P09455 135 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 TSHRP16473 764 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 GNL1P36915 607 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 SKIV2L2P42285 1042 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 AGAP11Q8TF27 550 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 MTMR9Q96QG7 549 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 TBCBQ99426 244 aa19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 RUVBL2Q9Y230 463 aaKnown RBP19.61■□□□□ 0.73
CCDC88B-204ENST00000463837 MAGEB16A2A368 324 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 TRDMT1O14717 391 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 TFE3P19532 575 aaPredicted RBP19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 SLC1A6P48664 564 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 AUHQ13825 339 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 RRM2BQ7LG56 351 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 CCDC60Q8IWA6 550 aaPredicted RBP19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 MYBL2P10244 700 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 PKN2Q16513 984 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 PCSK7Q16549 785 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 ECSITQ9BQ95 431 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 EVPLLA8MZ36 301 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 ARP10275 920 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 ZNF157P51786 506 aaPredicted RBP19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 ZBTB49Q6ZSB9 765 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 PIK3R5Q8WYR1 880 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 TCF7L2Q9NQB0 619 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 IL17RBQ9NRM6 502 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 DRG1Q9Y295 367 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 SLC30A1Q9Y6M5 507 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 MROH7Q68CQ1 1323 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 TULP2O00295 520 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 WFS1O76024 890 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 FKBP9O95302 570 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 GH1P01241 217 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 PRKAA1Q13131 559 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 PRMT9Q6P2P2 845 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 FKBP9P1Q75LS8 142 aa19.6■□□□□ 0.73
CCDC88B-204ENST00000463837 GRIK1P39086 918 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 CDK7P50613 346 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 SLC25A41Q8N5S1 370 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 SRPK1Q96SB4 655 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 EXOSC4Q9NPD3 245 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 GPRC5CQ9NQ84 441 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 ZNF839A8K0R7 811 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 KLRK1P26718 216 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 ELK3P41970 407 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 ARHGEF19Q8IW93 802 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 ETNPPLQ8TBG4 499 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 ZCWPW1Q9H0M4 648 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 MLH1P40692 756 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 SLC12A3P55017 1021 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 CHRNB3Q05901 458 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 ITPK1Q13572 414 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 GRTP1Q5TC63 336 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 MPZL3Q6UWV2 235 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 CCDC81Q6ZN84 652 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 LRRC55Q6ZSA7 311 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 BAP1Q92560 729 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 ERAP1Q9NZ08 941 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 HEATR9A2RTY3 570 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 LIN7AO14910 233 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 AHCYL1O43865 530 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 RPL10AP62906 217 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 EFCAB12Q6NXP0 572 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 KYAT3Q6YP21 454 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 TMEM139Q8IV31 216 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 NR1H4Q96RI1 486 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 ACOT9Q9Y305 439 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 ADGRA2Q96PE1 1338 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 XRCC4Q13426 336 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 STRA8Q7Z7C7 330 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 FAM172AQ8WUF8 416 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 SPIRE2Q8WWL2 714 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 LRRC39Q96DD0 335 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 MTMR12Q9C0I1 747 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 DPP3Q9NY33 737 aa19.59■□□□□ 0.73
CCDC88B-204ENST00000463837 F9P00740 461 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 ZNF23P17027 643 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 RAP1GDS1P52306 607 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 PSMC6P62333 389 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 CSTF3Q12996 717 aaKnown RBP19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 UGT3A1Q6NUS8 523 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 NET1Q7Z628 596 aaPredicted RBP19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 MAGEC3Q8TD91 643 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 ART4Q93070 314 aa19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 PABPC5Q96DU9 382 aaKnown RBP19.58■□□□□ 0.73
CCDC88B-204ENST00000463837 GANQ9H2C0 597 aa19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms