RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	STXBP4	Q6ZWJ1	553 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	LPCAT2	Q7L5N7	544 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	TMEM25	Q86YD3	366 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	SYT12	Q8IV01	421 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	FUK	Q8N0W3	1084 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	XXYLT1	Q8NBI6	393 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	PDZD8	Q8NEN9	1154 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	DEFB124	Q8NES8	71 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	FBXO32	Q969P5	355 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	ELMO3	Q96BJ8	720 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	CCDC127	Q96BQ5	260 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	OTUB2	Q96DC9	234 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	INTS4	Q96HW7	963 aa	Known RBP	11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	SCNM1	Q9BWG6	230 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	CUEDC2	Q9H467	287 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	CAPN10	Q9HC96	672 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	CSNK1G1	Q9HCP0	422 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	FSCN3	Q9NQT6	498 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	TBC1D14	Q9P2M4	693 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	STARD13	Q9Y3M8	1113 aa		11.85	□□□□□ -0.51
PTPN7-204	ENST00000462815	TCRBV21S2A2	A0A5A6	115 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	LRRIQ3	A6PVS8	624 aa	Predicted RBP	11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815		A8MXQ7	604 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	PPP6R2	O75170	966 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	RTN3	O95197	1032 aa	Predicted RBP	11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	ABL1	P00519	1130 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	CAPNS1	P04632	268 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	TNNI1	P19237	187 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	ITPKA	P23677	461 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	HOXD12	P35452	270 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	CYP2J2	P51589	502 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	SNRPF	P62306	86 aa	Known RBP	11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	TNNC1	P63316	161 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	ASIC1	P78348	528 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	GAD2	Q05329	585 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	IFRD2	Q12894	506 aa	Predicted RBP	11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	LMAN2	Q12907	356 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	HECTD3	Q5T447	861 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	UNC13D	Q70J99	1090 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	ARMCX6	Q7L4S7	300 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	NELFCD	Q8IXH7	590 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	TERB1	Q8NA31	727 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	KCNV2	Q8TDN2	545 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	TMEM174	Q8WUU8	243 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	HMGB4	Q8WW32	186 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	DHX58	Q96C10	678 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	SMO	Q99835	787 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	POLM	Q9NP87	494 aa	Predicted RBP	11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	SPHK2	Q9NRA0	654 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	GMIP	Q9P107	970 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	HMGXB4	Q9UGU5	601 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	CHORDC1	Q9UHD1	332 aa	Predicted RBP	11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	GON4L	Q3T8J9	2241 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	BAHCC1	Q9P281	2608 aa		11.84	□□□□□ -0.51
PTPN7-204	ENST00000462815	IGHV1OR15-9	A0A0B4J2B8	117 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	HHLA1	C9JL84	531 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	SPTLC2	O15270	562 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	C4BPA	P04003	597 aa	Known RBP	11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	LYSMD4	Q5XG99	296 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	GPRIN1	Q7Z2K8	1008 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	TTC30A	Q86WT1	665 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	SLC41A1	Q8IVJ1	513 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	ZNF513	Q8N8E2	541 aa	Predicted RBP	11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	NAT16	Q8N8M0	369 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	PARD3B	Q8TEW8	1205 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	SYAP1	Q96A49	352 aa	Predicted RBP	11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	SPACA7	Q96KW9	195 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	ACOX2	Q99424	681 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	KLF16	Q9BXK1	252 aa	Predicted RBP	11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	LRRC27	Q9C0I9	530 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	UPF2	Q9HAU5	1272 aa	Known RBP	11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	DMAP1	Q9NPF5	467 aa	Predicted RBP	11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	CD93	Q9NPY3	652 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	DMAC2	Q9NW81	257 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	COMMD8	Q9NX08	183 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	OSER1	Q9NX31	292 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	MARK1	Q9P0L2	795 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	CALCOCO1	Q9P1Z2	691 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	NXF1	Q9UBU9	619 aa	Known RBP	11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	ATRX	P46100	2492 aa		11.83	□□□□□ -0.52
PTPN7-204	ENST00000462815	CEP192	Q8TEP8	1941 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	ADAMTS9	Q9P2N4	1935 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	FAM221B	A6H8Z2	402 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	TMEM8B	A6NDV4	472 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	PRRT4	C9JH25	899 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	STX6	O43752	255 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	KLRC4	O43908	158 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	CACNG3	O60359	315 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	GJB3	O75712	270 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	YEATS4	O95619	227 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	HOXB3	P14651	431 aa	Predicted RBP	11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	NDUFV2	P19404	249 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	PI4KA	P42356	2102 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	MAPK8	P45983	427 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	FAM193A	P78312	1265 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	DLG4	P78352	724 aa		11.82	□□□□□ -0.52
PTPN7-204	ENST00000462815	UAP1L1	Q3KQV9	507 aa		11.82	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms