RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SLC9A9Q8IVB4 645 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 BBS7Q8IWZ6 715 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 ETFBKMTQ8IXQ9 262 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 RLN3Q8WXF3 142 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 PAGE5Q96GU1 130 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 CHAMP1Q96JM3 812 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 SMOQ99835 787 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 KCTD10Q9H3F6 313 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 SH3BP1Q9Y3L3 701 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 GTF3C3Q9Y5Q9 886 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 FRYQ5TBA9 3013 aa17.06■□□□□ 0.32
COL7A1-204ENST00000462475 A0A0A0MRY4 1105 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 C4orf47A7E2U8 309 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-204ENST00000462475 ADAM23O75077 832 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 BEST1O76090 585 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 ALDH1A2O94788 518 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 NR3C1P04150 777 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 IRF1P10914 325 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 P2RY2P41231 377 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 DHPSP49366 369 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-204ENST00000462475 NDST1P52848 882 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 GAD2Q05329 585 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 ZACNQ401N2 412 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 HSF5Q4G112 596 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-204ENST00000462475 SPOPLQ6IQ16 392 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 PSAPL1Q6NUJ1 521 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 FRMD1Q8N878 549 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 NAT16Q8N8M0 369 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 SLC2A14Q8TDB8 520 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 OTUB2Q96DC9 234 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 FAM49BQ9NUQ9 324 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 CIZ1Q9ULV3 898 aaPredicted RBP17.05■□□□□ 0.32
COL7A1-204ENST00000462475 ABCA7Q8IZY2 2146 aa17.05■□□□□ 0.32
COL7A1-204ENST00000462475 HOXC11O43248 304 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-204ENST00000462475 TNFRSF4P43489 277 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 ASPAP45381 313 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 NOVA1P51513 510 aaKnown RBP17.04■□□□□ 0.32
COL7A1-204ENST00000462475 EOGTQ5NDL2 527 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 C1orf220Q5T0J3 134 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 ATL3Q6DD88 541 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 SV2AQ7L0J3 742 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 HSCBQ8IWL3 235 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 C12orf29Q8N999 325 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 WHAMMQ8TF30 809 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 TMEM174Q8WUU8 243 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 HMGB4Q8WW32 186 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 NACA2Q9H009 215 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 POLMQ9NP87 494 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-204ENST00000462475 COMMD8Q9NX08 183 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 BCCIPQ9P287 314 aaKnown RBP eCLIP17.04■□□□□ 0.32
COL7A1-204ENST00000462475 RCOR1Q9UKL0 485 aa17.04■□□□□ 0.32
COL7A1-204ENST00000462475 TCRBV21S2A2A0A5A6 115 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 PDXKO00764 312 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 GIPC1O14908 333 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 KHNYNO15037 678 aaKnown RBP17.03■□□□□ 0.32
COL7A1-204ENST00000462475 TRIM24O15164 1050 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 TLR5O60602 858 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 TULP3O75386 442 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 ASS1P00966 412 aaKnown RBP17.03■□□□□ 0.32
COL7A1-204ENST00000462475 HSP90AA1P07900 732 aaKnown RBP17.03■□□□□ 0.32
COL7A1-204ENST00000462475 P4HA1P13674 534 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 PFKFB1P16118 471 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 MAP3K7CLP57077 242 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 SHC2P98077 582 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 SGSM1Q2NKQ1 1148 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 CEP135Q66GS9 1140 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 ARMCX6Q7L4S7 300 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 GPRIN1Q7Z2K8 1008 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 TMEM25Q86YD3 366 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 CRYBG2Q8N1P7 616 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 TMC2Q8TDI7 906 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 PIGKQ92643 395 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 SPACA7Q96KW9 195 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 TWNKQ96RR1 684 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 DUSP9Q99956 384 aaKnown RBP17.03■□□□□ 0.32
COL7A1-204ENST00000462475 CSNK1G1Q9HCP0 422 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.03■□□□□ 0.32
COL7A1-204ENST00000462475 SPHK2Q9NRA0 654 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 MBD1Q9UIS9 605 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-204ENST00000462475 CFAP45Q9UL16 551 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 CFAP47Q6ZTR5 3102 aa17.03■□□□□ 0.32
COL7A1-204ENST00000462475 ASPMQ8IZT6 3477 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 A0A1B0GVL5 298 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 TBC1D3BA6NDS4 549 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 GREM1O60565 184 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 TBX18O95935 607 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 HLA-DRAP01903 254 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 RPN1P04843 607 aaKnown RBP17.02■□□□□ 0.32
COL7A1-204ENST00000462475 PDIA4P13667 645 aaKnown RBP17.02■□□□□ 0.32
COL7A1-204ENST00000462475 ADORA2BP29275 332 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 PIK3CAP42336 1068 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 PTGER3P43115 390 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 IRX4P78413 519 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 ANO4Q32M45 955 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 MAP7D1Q3KQU3 841 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 BTBD8Q5XKL5 378 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 LPCAT2Q7L5N7 544 aa17.02■□□□□ 0.32
COL7A1-204ENST00000462475 UNC93AQ86WB7 457 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms