RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 NR1I3Q14994 352 aa24.02■■□□□ 1.44
CCDC28B-203ENST00000461819 TRIM67Q6ZTA4 783 aa24.02■■□□□ 1.44
CCDC28B-203ENST00000461819 HSFY1Q96LI6 401 aa24.02■■□□□ 1.44
CCDC28B-203ENST00000461819 RNF38Q9H0F5 515 aa24.02■■□□□ 1.44
CCDC28B-203ENST00000461819 NMUR1Q9HB89 426 aa24.02■■□□□ 1.44
CCDC28B-203ENST00000461819 THG1LQ9NWX6 298 aaKnown RBP24.02■■□□□ 1.44
CCDC28B-203ENST00000461819 IFNKQ9P0W0 207 aa24.02■■□□□ 1.44
CCDC28B-203ENST00000461819 PCDHGC3Q9UN70 934 aa24.02■■□□□ 1.44
CCDC28B-203ENST00000461819 ARHGAP26Q9UNA1 814 aa24.02■■□□□ 1.44
CCDC28B-203ENST00000461819 OLFM2O95897 454 aa24.01■■□□□ 1.43
CCDC28B-203ENST00000461819 RALAP11233 206 aa24.01■■□□□ 1.43
CCDC28B-203ENST00000461819 PFKPQ01813 784 aa24.01■■□□□ 1.43
CCDC28B-203ENST00000461819 TAF3Q5VWG9 929 aa24.01■■□□□ 1.43
CCDC28B-203ENST00000461819 CNGB3Q9NQW8 809 aa24.01■■□□□ 1.43
CCDC28B-203ENST00000461819 OSER1Q9NX31 292 aa24.01■■□□□ 1.43
CCDC28B-203ENST00000461819 SMPD4Q9NXE4 827 aa24.01■■□□□ 1.43
CCDC28B-203ENST00000461819 CPQQ9Y646 472 aa24.01■■□□□ 1.43
CCDC28B-203ENST00000461819 TPM3P06753 285 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 RARGP13631 454 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 ACADSBP45954 432 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 YWHAGP61981 247 aaKnown RBP eCLIP24■■□□□ 1.43
CCDC28B-203ENST00000461819 SLC7A9P82251 487 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 FCHO2Q0JRZ9 810 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 USP4Q13107 963 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 ARHGAP29Q52LW3 1261 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 PM20D1Q6GTS8 502 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 CC2D1AQ6P1N0 951 aaPredicted RBP24■■□□□ 1.43
CCDC28B-203ENST00000461819 SCD5Q86SK9 330 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 TADA2BQ86TJ2 420 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 EPS8L1Q8TE68 723 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 SH3RF2Q8TEC5 729 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 STK32AQ8WU08 396 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 IRF7Q92985 503 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 LRRC3BQ96PB8 259 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 NOX5Q96PH1 765 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 CYLDQ9NQC7 956 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 CA14Q9ULX7 337 aa24■■□□□ 1.43
CCDC28B-203ENST00000461819 TECTAO75443 2155 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 COL4A2P08572 1712 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 FAM86C2PA6NEL3 165 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 TMEM221A6NGB7 291 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 M0R296 226 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 CHADO15335 359 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 ARID5AQ03989 594 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 PDCLQ13371 301 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 ZNF77Q15935 545 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 C10orf120Q5SQS8 335 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 NOP9Q86U38 636 aaKnown RBP23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 NDRG1Q92597 394 aaKnown RBP23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 CDK5RAP1Q96SZ6 601 aaKnown RBP23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 MIS12Q9H081 205 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 LHX5Q9H2C1 402 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 MTPAPQ9NVV4 582 aaKnown RBP eCLIP23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 CLIC5Q9NZA1 410 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 CYTH4Q9UIA0 394 aa23.99■■□□□ 1.43
CCDC28B-203ENST00000461819 LEFTY2O00292 366 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 FBXO21O94952 628 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 ATP5C1P36542 298 aaKnown RBP23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 DAOAP59103 153 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 PLCB2Q00722 1185 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 MTF1Q14872 753 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 BTBD8Q5XKL5 378 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 RSRC2Q7L4I2 434 aaKnown RBP23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 DDX42Q86XP3 938 aaKnown RBP eCLIP23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 SCML4Q8N228 414 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 C1orf131Q8NDD1 294 aaKnown RBP23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 GOLGA1Q92805 767 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 DNASE1L2Q92874 299 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 ZFYVE19Q96K21 471 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 C1QTNF1Q9BXJ1 281 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 WNT16Q9UBV4 365 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 NUDT5Q9UKK9 219 aa23.98■■□□□ 1.43
CCDC28B-203ENST00000461819 GABBR2O75899 941 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 TBX18O95935 607 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 ZNF677Q86XU0 584 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 SIX5Q8N196 739 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 RIN3Q8TB24 985 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 CSGALNACT1Q8TDX6 532 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 CLEC4CQ8WTT0 213 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 IRGQQ8WZA9 623 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 ASIC4Q96FT7 647 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 SLC4A5Q9BY07 1137 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 ARHGEF3Q9NR81 526 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 CFAP97Q9P2B7 532 aa23.97■■□□□ 1.43
CCDC28B-203ENST00000461819 YJEFN3A6XGL0 299 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 E5RJQ4 531 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 E7ENQ6 273 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 SART1O43290 800 aaKnown RBP23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 CBFA2T2O43439 604 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 MMEP08473 750 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 TCF3P15923 654 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 RPL34P49207 117 aaKnown RBP23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 BHLHA9Q7RTU4 235 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 FMNL3Q8IVF7 1028 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 TMEM35BQ8NCS4 154 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 SLC20A1Q8WUM9 679 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 DDX1Q92499 740 aaKnown RBP23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 PPP1R13BQ96KQ4 1090 aa23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 XPO4Q9C0E2 1151 aaKnown RBP23.96■■□□□ 1.43
CCDC28B-203ENST00000461819 MFSD1Q9H3U5 465 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms