RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 UBQLN1Q9UMX0 589 aaKnown RBP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 AP4E1Q9UPM8 1137 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 MYH7BA7E2Y1 1941 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 APOC4-APOC2K7ER74 178 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 MTA2O94776 668 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 APOC2P02655 101 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 HMGCRP04035 888 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 PAEPP09466 180 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 PRKAR2AP13861 404 aaKnown RBP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 BGNP21810 368 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 PGM1P36871 562 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 TAF6P49848 677 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 C1orf146Q5VVC0 180 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 YTHDF3Q7Z739 585 aaKnown RBP12.08□□□□□ -0.48
NPHP4-204ENST00000460696 AFAP1L2Q8N4X5 818 aa12.08□□□□□ -0.48
NPHP4-204ENST00000460696 DOCK2Q92608 1830 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 SOWAHBA6NEL2 793 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 GPR25O00155 361 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 SMAPO00193 183 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 SPAG6O75602 509 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 TCF4P15884 667 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 ATICP31939 592 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 DPYSL3Q14195 570 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 TTC39BQ5VTQ0 682 aaPredicted RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 DEFB128Q7Z7B8 93 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 UNC45BQ8IWX7 931 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 RYBPQ8N488 228 aaPredicted RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 E2F7Q96AV8 911 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 STAMBPL1Q96FJ0 436 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 FBXL18Q96ME1 805 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 OSBPL7Q9BZF2 842 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 SSX2IPQ9Y2D8 614 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 AFG3L2Q9Y4W6 797 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 A0A1W2PPM1 405 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 EEF2KO00418 725 aaKnown RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 CYP1A1P04798 512 aaPredicted RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 NCAM1P13591 858 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 MX2P20592 715 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 ACO1P21399 889 aaKnown RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 FAAP100Q0VG06 881 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 KBTBD12Q3ZCT8 623 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 AGGF1Q8N302 714 aaeCLIP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 NETO2Q8NC67 525 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 LENG1Q96BZ8 264 aaPredicted RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 GPR20Q99678 358 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 APOL2Q9BQE5 337 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 SHCBP1LQ9BZQ2 653 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 WWP1Q9H0M0 922 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 RNPEPQ9H4A4 650 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 RXFP1Q9HBX9 757 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 TNFSF13BQ9Y275 285 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 TIMM13Q9Y5L4 95 aaPredicted RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 B2RBV5 119 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 DFFAO00273 331 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 GIPC1O14908 333 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 LUC7L3O95232 432 aaKnown RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 AMPD1P23109 780 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 CYP2F1P24903 491 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 PDK2Q15119 407 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 MMEL1Q495T6 779 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 LRRC38Q5VT99 294 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 KIRREL3Q8IZU9 778 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 CCT6BQ92526 530 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 ZNF669Q96BR6 464 aaPredicted RBP12.07□□□□□ -0.48
NPHP4-204ENST00000460696 TLCD1Q96CP7 247 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 TEPSINQ96N21 525 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 STOML1Q9UBI4 398 aa12.07□□□□□ -0.48
NPHP4-204ENST00000460696 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 CBX6O95503 412 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 ARF4P18085 180 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 POU5F1BQ06416 359 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 RPS6KA2Q15349 733 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 TAF1BQ53T94 588 aaPredicted RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 EFHC1Q5JVL4 640 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 FBXO47Q5MNV8 452 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 SLC26A11Q86WA9 606 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 RNF135Q8IUD6 432 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 TFB1MQ8WVM0 346 aaKnown RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 DNAJB3Q8WWF6 145 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 PLEKHA5Q9HAU0 1116 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 LRRC4CQ9HCJ2 640 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 DDIT4Q9NX09 232 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 LRFN2Q9ULH4 789 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 KAT6AQ92794 2004 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 BCORQ6W2J9 1755 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 CCDC22O60826 627 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 OPHN1O60890 802 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 LRCH4O75427 683 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 GHRP10912 638 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 KCNJ2P63252 427 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 PRKCZQ05513 592 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 ZC3H12AQ5D1E8 599 aaKnown RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 TXNRD3NBQ6F5E7 133 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 EXT2Q93063 718 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 FSD1LQ9BXM9 530 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 NIFKQ9BYG3 293 aaKnown RBP12.06□□□□□ -0.48
NPHP4-204ENST00000460696 RPS6KL1Q9Y6S9 549 aa12.06□□□□□ -0.48
NPHP4-204ENST00000460696 RRN3P2A6NIE6 340 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms