RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 CCDC192P0DO97 292 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 GALK1P51570 392 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 SATB1Q01826 763 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 LRMPQ12912 555 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 CLEC17AQ6ZS10 378 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 ADGRG2Q8IZP9 1017 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 ANKRD52Q8NB46 1076 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 CFAP54Q96N23 3096 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 CLSTN2Q9H4D0 955 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 KIAA1257Q9ULG3 409 aa17■□□□□ 0.31
COL7A1-203ENST00000459756 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17■□□□□ 0.31
COL7A1-203ENST00000459756 LILRB5O75023 590 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 ATG13O75143 517 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 PGFP49763 221 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 PSEN1P49768 467 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 FBXO43Q4G163 708 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 SGO2Q562F6 1265 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 CCDC186Q7Z3E2 898 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 UBR7Q8N806 425 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 MLKLQ8NB16 471 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 LMO3Q8TAP4 145 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 CD101Q93033 1021 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 OTUB2Q96DC9 234 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 FBRSL1Q9HCM7 1045 aaKnown RBP16.99■□□□□ 0.31
COL7A1-203ENST00000459756 SH3BP1Q9Y3L3 701 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 USP3Q9Y6I4 520 aa16.99■□□□□ 0.31
COL7A1-203ENST00000459756 FAM186AA6NE01 2351 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 EGFP01133 1207 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 AFPP02771 609 aaKnown RBP16.98■□□□□ 0.31
COL7A1-203ENST00000459756 CYP17A1P05093 508 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 ATP5C1P36542 298 aaKnown RBP16.98■□□□□ 0.31
COL7A1-203ENST00000459756 KCNH2Q12809 1159 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 KLHDC10Q6PID8 442 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 TADA2BQ86TJ2 420 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 PIGZQ86VD9 579 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 PPM1KQ8N3J5 372 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 ZNF276Q8N554 614 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 HESX1Q9UBX0 185 aa16.98■□□□□ 0.31
COL7A1-203ENST00000459756 A0A1W2PQH9 124 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 SCAMP3O14828 347 aaKnown RBP16.97■□□□□ 0.31
COL7A1-203ENST00000459756 ADH1CP00326 375 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 PAEPP09466 180 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 VDRP11473 427 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 CD19P15391 556 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 HOXA6P31267 233 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 BCAT1P54687 386 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 GCNT1Q02742 428 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 GOLGA8FQ08AF8 430 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 GOLGA8DPQ0D2H9 430 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 DHCR24Q15392 516 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 GOLGA7BQ2TAP0 167 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 GAB4Q2WGN9 574 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 NAIF1Q69YI7 327 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-203ENST00000459756 TTC30AQ86WT1 665 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 SUMF1Q8NBK3 374 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 EHBP1Q8NDI1 1231 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 CCDC26Q8TAB7 109 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 CDK5RAP1Q96SZ6 601 aaKnown RBP16.97■□□□□ 0.31
COL7A1-203ENST00000459756 KLF16Q9BXK1 252 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-203ENST00000459756 NMUR1Q9HB89 426 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.97■□□□□ 0.31
COL7A1-203ENST00000459756 OSER1Q9NX31 292 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 CLIC5Q9NZA1 410 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 NAGPAQ9UK23 515 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 TSPAN16Q9UKR8 245 aa16.97■□□□□ 0.31
COL7A1-203ENST00000459756 PTPRZ1P23471 2315 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-203ENST00000459756 CHURC1-FNTBB4DL54 471 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 K7ESF4 209 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 XPO1O14980 1071 aaKnown RBP16.96■□□□□ 0.31
COL7A1-203ENST00000459756 RNF40O75150 1001 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 TBX18O95935 607 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 RALAP11233 206 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 RARGP13631 454 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 OPRD1P41143 372 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 RAB41Q5JT25 222 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 C10orf120Q5SQS8 335 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 RHBDF2Q6PJF5 856 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 TMEM270Q6UE05 265 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 SCD5Q86SK9 330 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 ARHGAP18Q8N392 663 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 NUP62CLQ9H1M0 184 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 EPC1Q9H2F5 836 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 C2orf42Q9NWW7 574 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 DNMT3LQ9UJW3 386 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 PCDHB4Q9Y5E5 795 aa16.96■□□□□ 0.31
COL7A1-203ENST00000459756 ZNF292O60281 2723 aa16.96■□□□□ 0.3
COL7A1-203ENST00000459756 O00370 1275 aa16.95■□□□□ 0.3
COL7A1-203ENST00000459756 SETSIPP0DME0 302 aa16.95■□□□□ 0.3
COL7A1-203ENST00000459756 IRF1P10914 325 aa16.95■□□□□ 0.3
COL7A1-203ENST00000459756 EIF2DP41214 584 aaKnown RBP16.95■□□□□ 0.3
COL7A1-203ENST00000459756 PLA2G4AP47712 749 aa16.95■□□□□ 0.3
COL7A1-203ENST00000459756 PDE4CQ08493 712 aa16.95■□□□□ 0.3
COL7A1-203ENST00000459756 BST2Q10589 180 aaKnown RBP16.95■□□□□ 0.3
COL7A1-203ENST00000459756 HTR3DQ70Z44 454 aa16.95■□□□□ 0.3
COL7A1-203ENST00000459756 BBS7Q8IWZ6 715 aa16.95■□□□□ 0.3
COL7A1-203ENST00000459756 EZH1Q92800 747 aaPredicted RBP16.95■□□□□ 0.3
COL7A1-203ENST00000459756 CNOT6LQ96LI5 555 aaKnown RBP16.95■□□□□ 0.3
COL7A1-203ENST00000459756 MED15Q96RN5 788 aa16.95■□□□□ 0.3
COL7A1-203ENST00000459756 INTS2Q9H0H0 1204 aaKnown RBP16.95■□□□□ 0.3
COL7A1-203ENST00000459756 GVINP1Q7Z2Y8 2422 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms