RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 SH2D5Q6ZV89 423 aa16.68■□□□□ 0.26
SHQ1-202ENST00000444040 ACOT1Q86TX2 421 aa16.68■□□□□ 0.26
SHQ1-202ENST00000444040 PCDH19Q8TAB3 1148 aa16.68■□□□□ 0.26
SHQ1-202ENST00000444040 FAM172AQ8WUF8 416 aa16.68■□□□□ 0.26
SHQ1-202ENST00000444040 SLC44A1Q8WWI5 657 aa16.68■□□□□ 0.26
SHQ1-202ENST00000444040 FAF2Q96CS3 445 aa16.68■□□□□ 0.26
SHQ1-202ENST00000444040 ZMAT2Q96NC0 199 aaKnown RBP16.68■□□□□ 0.26
SHQ1-202ENST00000444040 LRRC37BQ96QE4 947 aa16.68■□□□□ 0.26
SHQ1-202ENST00000444040 SLC17A7Q9P2U7 560 aa16.68■□□□□ 0.26
SHQ1-202ENST00000444040 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.67■□□□□ 0.26
SHQ1-202ENST00000444040 TGM2P21980 687 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 SETDB1Q15047 1291 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 SCYL2Q6P3W7 929 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 SNRNP25Q9BV90 132 aaKnown RBP16.67■□□□□ 0.26
SHQ1-202ENST00000444040 NGRNQ9NPE2 291 aaKnown RBP16.67■□□□□ 0.26
SHQ1-202ENST00000444040 RAB6BQ9NRW1 208 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 KCNN4O15554 427 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 PAPSS1O43252 624 aaPredicted RBP16.67■□□□□ 0.26
SHQ1-202ENST00000444040 RBL1P28749 1068 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 E2F5Q15329 346 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 VSIG1Q86XK7 387 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 SCUBE3Q8IX30 993 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 TBCBQ99426 244 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 VPS11Q9H270 941 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 PNPLA8Q9NP80 782 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 SNX9Q9Y5X1 595 aa16.67■□□□□ 0.26
SHQ1-202ENST00000444040 BCLAF3A2AJT9 711 aaKnown RBP16.66■□□□□ 0.26
SHQ1-202ENST00000444040 APOL1O14791 398 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 SETSIPP0DME0 302 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 HOXA11P31270 313 aaPredicted RBP16.66■□□□□ 0.26
SHQ1-202ENST00000444040 ZNF200P98182 395 aaPredicted RBP16.66■□□□□ 0.26
SHQ1-202ENST00000444040 PTK7Q13308 1070 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 GRIK4Q16099 956 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 CCDC91Q7Z6B0 441 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 ZNF410Q86VK4 478 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 GPRC5AQ8NFJ5 357 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 SERAC1Q96JX3 654 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 ETNK1Q9HBU6 452 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 TXLNGQ9NUQ3 528 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 FAM49BQ9NUQ9 324 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.66■□□□□ 0.26
SHQ1-202ENST00000444040 IQANK1A0A1B0GTG1 560 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 A8MUI8 341 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 MDM4O15151 490 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 SPAG6O75602 509 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 DCTN3O75935 186 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 SDC4P31431 198 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 HDAC4P56524 1084 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 BCAR1P56945 870 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 YWHAZP63104 245 aaKnown RBP16.66■□□□□ 0.26
SHQ1-202ENST00000444040 SLC18A2Q05940 514 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 ZBTB6Q15916 424 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 PLEKHG4Q58EX7 1191 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 UTP4Q969X6 686 aaKnown RBP16.66■□□□□ 0.26
SHQ1-202ENST00000444040 B3GNT5Q9BYG0 378 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 PLEKHA5Q9HAU0 1116 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 RNF181Q9P0P0 153 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 HEY1Q9Y5J3 304 aa16.66■□□□□ 0.26
SHQ1-202ENST00000444040 WDR91A4D1P6 747 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 CFAP69A5D8W1 941 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 SNAI1O95863 264 aaPredicted RBP16.65■□□□□ 0.26
SHQ1-202ENST00000444040 MT-ND3P03897 115 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 DHRS4L1P0CG22 281 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 ALDH3A1P30838 453 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 ETV4P43268 484 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 MAGEA6P43360 314 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 GCLCP48506 637 aaPredicted RBP16.65■□□□□ 0.26
SHQ1-202ENST00000444040 FAAP100Q0VG06 881 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 SNAPC2Q13487 334 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 DCAF4L1Q3SXM0 396 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 PRPF39Q86UA1 669 aaKnown RBP16.65■□□□□ 0.26
SHQ1-202ENST00000444040 AGAP11Q8TF27 550 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 TBC1D31Q96DN5 1066 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 ZNF670Q9BS34 389 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 PLAC1Q9HBJ0 212 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 SNTG2Q9NY99 539 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 DERAQ9Y315 318 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 C2CD2LO14523 706 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 ATP5HO75947 161 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 NPTXRO95502 500 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 T-ENOLP0DO92 83 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 NEK3P51956 506 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 YWHAGP61981 247 aaKnown RBP eCLIP16.65■□□□□ 0.26
SHQ1-202ENST00000444040 CAND1Q86VP6 1230 aaKnown RBP16.65■□□□□ 0.26
SHQ1-202ENST00000444040 PTPRN2Q92932 1015 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 C11orf84Q9BUA3 381 aaPredicted RBP16.65■□□□□ 0.26
SHQ1-202ENST00000444040 FRMD8Q9BZ67 464 aaPredicted RBP16.65■□□□□ 0.26
SHQ1-202ENST00000444040 LRMDAQ9H2I8 198 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 STK38LQ9Y2H1 464 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 MAP3K6O95382 1288 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 TFE3P19532 575 aaPredicted RBP16.65■□□□□ 0.26
SHQ1-202ENST00000444040 SEPT7Q16181 437 aaKnown RBP16.65■□□□□ 0.26
SHQ1-202ENST00000444040 KIZQ2M2Z5 673 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 SESTD1Q86VW0 696 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 ZNF398Q8TD17 642 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 STK32AQ8WU08 396 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 SNX27Q96L92 541 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 ADAMTS10Q9H324 1103 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 TUBGCP4Q9UGJ1 667 aa16.65■□□□□ 0.26
SHQ1-202ENST00000444040 TTLL3Q9Y4R7 772 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms