RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 HEYLQ9NQ87 328 aaPredicted RBP4.16□□□□□ -1.74
VPS41-207ENST00000439468 KLC4Q9NSK0 619 aa4.16□□□□□ -1.74
VPS41-207ENST00000439468 GRHPRQ9UBQ7 328 aa4.16□□□□□ -1.74
VPS41-207ENST00000439468 HPSEQ9Y251 543 aa4.16□□□□□ -1.74
VPS41-207ENST00000439468 ADGRA2Q96PE1 1338 aa4.16□□□□□ -1.74
VPS41-207ENST00000439468 POLR2AP24928 1970 aaKnown RBP4.15□□□□□ -1.74
VPS41-207ENST00000439468 NPC1O15118 1278 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 LRPAP1P30533 357 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 ICA1Q05084 483 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 E2F2Q14209 437 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 KRT72Q14CN4 511 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 INSCQ1MX18 579 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 PGBD2Q6P3X8 592 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 KRT28Q7Z3Y7 464 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 CCDC28AQ8IWP9 274 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 SUGP1Q8IWZ8 645 aaKnown RBP4.15□□□□□ -1.75
VPS41-207ENST00000439468 SLC15A3Q8IY34 581 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 FAM109AQ8N4B1 249 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 OR1N1Q8NGS0 311 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 IPCEF1Q8WWN9 437 aaPredicted RBP4.15□□□□□ -1.75
VPS41-207ENST00000439468 FAM136AQ96C01 138 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 PBKQ96KB5 322 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 SNX27Q96L92 541 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 OSBPL9Q96SU4 736 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 ALG8Q9BVK2 526 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 SELENOOQ9BVL4 669 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 SORBS1Q9BX66 1292 aaKnown RBP4.15□□□□□ -1.75
VPS41-207ENST00000439468 EPS8L2Q9H6S3 715 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 EHD3Q9NZN3 535 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 LRFN1Q9P244 771 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 ARPP21Q9UBL0 812 aaPredicted RBP4.15□□□□□ -1.75
VPS41-207ENST00000439468 CAPN11Q9UMQ6 739 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 PAXBP1Q9Y5B6 917 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.15□□□□□ -1.75
VPS41-207ENST00000439468 ENTPD2Q9Y5L3 495 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 SNX14Q9Y5W7 946 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 WNT6Q9Y6F9 365 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 SPATA31A3Q5VYP0 1347 aa4.15□□□□□ -1.75
VPS41-207ENST00000439468 GOLGA6L3A6NEY3 463 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 VWC2LB2RUY7 222 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 GCOM1H8Y6P7 765 aaPredicted RBP4.14□□□□□ -1.75
VPS41-207ENST00000439468 TRIM38O00635 465 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 CCP110O43303 1012 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 KCNQ3O43525 872 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 C1QL1O75973 258 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 USP1O94782 785 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 CSTBP04080 98 aaKnown RBP4.14□□□□□ -1.75
VPS41-207ENST00000439468 ELFN1P0C7U0 828 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 GYS1P13807 737 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 ZFXP17010 805 aaPredicted RBP4.14□□□□□ -1.75
VPS41-207ENST00000439468 COPAP53621 1224 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 SPARCL1Q14515 664 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 ZRSR2Q15696 482 aaKnown RBP4.14□□□□□ -1.75
VPS41-207ENST00000439468 TBCCQ15814 346 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 PLAC9Q5JTB6 97 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 ICE2Q659A1 982 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 SLC9A4Q6AI14 798 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 SPARTQ8N0X7 666 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 NKAPQ8N5F7 415 aaKnown RBP4.14□□□□□ -1.75
VPS41-207ENST00000439468 C11orf44Q8N8P7 122 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 CYP2W1Q8TAV3 490 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 ATG4AQ8WYN0 398 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 SARAFQ96BY9 339 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 HERPUD2Q9BSE4 406 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 DHX36Q9H2U1 1008 aaKnown RBP4.14□□□□□ -1.75
VPS41-207ENST00000439468 DKK3Q9UBP4 350 aa4.14□□□□□ -1.75
VPS41-207ENST00000439468 HNRNPDLO14979 420 aaKnown RBP4.13□□□□□ -1.75
VPS41-207ENST00000439468 CD3EAPO15446 510 aaKnown RBP4.13□□□□□ -1.75
VPS41-207ENST00000439468 CREB3O43889 395 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 PROP1O75360 226 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 SKAP2O75563 359 aaPredicted RBP4.13□□□□□ -1.75
VPS41-207ENST00000439468 NXPH3O95157 252 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 ARP10275 920 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 CDK4P11802 303 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 NDUFB7P17568 137 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 EGR1P18146 543 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 UQCRC1P31930 480 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 CCT8P50990 548 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 BLMHQ13867 455 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 ZACNQ401N2 412 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.13□□□□□ -1.75
VPS41-207ENST00000439468 TEDDM1Q5T9Z0 273 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 ZNF788Q6ZQV5 615 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 ABRAQ8N0Z2 381 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 MYRIPQ8NFW9 859 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 ATRIPQ8WXE1 791 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 CCT6BQ92526 530 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 EVI5LQ96CN4 794 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 TIMP4Q99727 224 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 C17orf80Q9BSJ5 609 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 TRIM5Q9C035 493 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 SLC25A32Q9H2D1 315 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 TM7SF3Q9NS93 570 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 LUZP4Q9P127 313 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 FRMD4BQ9Y2L6 1034 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 PCSK5Q92824 1860 aa4.13□□□□□ -1.75
VPS41-207ENST00000439468 hCG_1642624A0A1W2PR95 340 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 WDR27A2RRH5 827 aa4.12□□□□□ -1.75
VPS41-207ENST00000439468 MANSC4A6NHS7 340 aaPredicted RBP4.12□□□□□ -1.75
VPS41-207ENST00000439468 AQP7P3A6NL99 342 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms