RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TTC30AQ86WT1 665 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 RBBP8NLQ8NC74 664 aaPredicted RBP16■□□□□ 0.15
LIMS3-201ENST00000437679 CRACR2AQ9BSW2 395 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 LINC00597Q9H2U6 94 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 UBE2TQ9NPD8 197 aaPredicted RBP16■□□□□ 0.15
LIMS3-201ENST00000437679 CYLDQ9NQC7 956 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 NAGPAQ9UK23 515 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 SH3BP1Q9Y3L3 701 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 USP3Q9Y6I4 520 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 E2F8A0AVK6 867 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 GTPBP10A4D1E9 387 aaKnown RBP15.99■□□□□ 0.15
LIMS3-201ENST00000437679 SP9P0CG40 484 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 SETSIPP0DME0 302 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 RALAP11233 206 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 RARGP13631 454 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 KRT5P13647 590 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 GJA4P35212 333 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 PDE4CQ08493 712 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 GOLGA8FQ08AF8 430 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 GOLGA8DPQ0D2H9 430 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 EXOC3L4Q17RC7 722 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 RAB41Q5JT25 222 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 SASS6Q6UVJ0 657 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 LCLAT1Q6UWP7 414 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 RBM43Q6ZSC3 357 aaKnown RBP15.99■□□□□ 0.15
LIMS3-201ENST00000437679 ENOSF1Q7L5Y1 443 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 ARHGAP18Q8N392 663 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 SYNPOQ8N3V7 929 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 UBA3Q8TBC4 463 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 ZFRQ96KR1 1074 aaKnown RBP15.99■□□□□ 0.15
LIMS3-201ENST00000437679 KREMEN1Q96MU8 473 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 CDK5RAP1Q96SZ6 601 aaKnown RBP15.99■□□□□ 0.15
LIMS3-201ENST00000437679 PHOX2BQ99453 314 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 NMUR1Q9HB89 426 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 LRRC4Q9HBW1 653 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 RBM12Q9NTZ6 932 aaKnown RBP15.99■□□□□ 0.15
LIMS3-201ENST00000437679 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.99■□□□□ 0.15
LIMS3-201ENST00000437679 TBC1D14Q9P2M4 693 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 FBXO4Q9UKT5 387 aa15.99■□□□□ 0.15
LIMS3-201ENST00000437679 RNF225M0QZC1 329 aaPredicted RBP15.98■□□□□ 0.15
LIMS3-201ENST00000437679 TRDMT1O14717 391 aaKnown RBP15.98■□□□□ 0.15
LIMS3-201ENST00000437679 SCAMP3O14828 347 aaKnown RBP15.98■□□□□ 0.15
LIMS3-201ENST00000437679 TBX18O95935 607 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 IRF1P10914 325 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 PRKCSHP14314 528 aaPredicted RBP15.98■□□□□ 0.15
LIMS3-201ENST00000437679 BRD2P25440 801 aaKnown RBP15.98■□□□□ 0.15
LIMS3-201ENST00000437679 NBL1P41271 181 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 MRE11P49959 708 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 CCR3P51677 355 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 TKTL1P51854 596 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 ZNF132P52740 706 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 MFAP3P55082 362 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 CSTF1Q05048 431 aaKnown RBP15.98■□□□□ 0.15
LIMS3-201ENST00000437679 CCINQ13939 588 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 PPP2R5DQ14738 602 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 CNGA2Q16280 664 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 TMEM196Q5HYL7 178 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 C10orf120Q5SQS8 335 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 KLHDC10Q6PID8 442 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 TRIM65Q6PJ69 517 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 MAMSTRQ6ZN01 415 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 ALYREFQ86V81 257 aaKnown RBP15.98■□□□□ 0.15
LIMS3-201ENST00000437679 MAML2Q8IZL2 1156 aaPredicted RBP15.98■□□□□ 0.15
LIMS3-201ENST00000437679 TFAP2BQ92481 460 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 P2RY13Q9BPV8 354 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 OSER1Q9NX31 292 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 CLIC5Q9NZA1 410 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 DNMT3LQ9UJW3 386 aa15.98■□□□□ 0.15
LIMS3-201ENST00000437679 KCNJ18B7U540 433 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 M0QYV0 167 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 TULP2O00295 520 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 SLC9A1P19634 815 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 DRD1P21728 446 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 PLA2G4AP47712 749 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 GALK1P51570 392 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 KCNJ12Q14500 433 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 ZNF528Q3MIS6 628 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 VWA3BQ502W6 1294 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 HSP90AA4PQ58FG1 418 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 CCDC183Q5T5S1 534 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 FSTL4Q6MZW2 842 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 ZC3H14Q6PJT7 736 aaKnown RBP15.97■□□□□ 0.15
LIMS3-201ENST00000437679 SCD5Q86SK9 330 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 ADGRG2Q8IZP9 1017 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 SIX6OS1Q8N1H7 587 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 ZNF276Q8N554 614 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 ENOX1Q8TC92 643 aaKnown RBP15.97■□□□□ 0.15
LIMS3-201ENST00000437679 KCTD13Q8WZ19 329 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 CD101Q93033 1021 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 OTUB2Q96DC9 234 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 CHFRQ96EP1 664 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 TUBGCP2Q9BSJ2 902 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 KLF16Q9BXK1 252 aaPredicted RBP15.97■□□□□ 0.15
LIMS3-201ENST00000437679 ULBP1Q9BZM6 244 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 NDST4Q9H3R1 872 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 ANO10Q9NW15 660 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 APEX2Q9UBZ4 518 aa15.97■□□□□ 0.15
LIMS3-201ENST00000437679 LSM7Q9UK45 103 aaKnown RBP15.97■□□□□ 0.15
LIMS3-201ENST00000437679 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.97■□□□□ 0.15
LIMS3-201ENST00000437679 CNTN6Q9UQ52 1028 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms