RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 PRMT7Q9NVM4 692 aaPredicted RBP11.76□□□□□ -0.53
USP4-205ENST00000431357 MKS1Q9NXB0 559 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 CORO1CQ9ULV4 474 aaPredicted RBP11.76□□□□□ -0.53
USP4-205ENST00000431357 BCLAF3A2AJT9 711 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 C2CD4BA6NLJ0 364 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 NOP56O00567 594 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 GSC2O15499 205 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 ATP5BP06576 529 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 DLDP09622 509 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 CXCL8P10145 99 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 MCF2P10911 925 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 PDGFRAP16234 1089 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 DESP17661 470 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 GM2AP17900 193 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 ATP6V1C1P21283 382 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 SERPINB4P48594 390 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 POU5F1BQ06416 359 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 KRT81Q14533 505 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 LY6KQ17RY6 165 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 SLC5A9Q2M3M2 681 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 ATG16L1Q676U5 607 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 ZC3H18Q86VM9 953 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 RAB3IL1Q8TBN0 382 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 RXFP2Q8WXD0 754 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 MTBPQ96DY7 904 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 HEXIM2Q96MH2 286 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 TWNKQ96RR1 684 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 PEBP4Q96S96 227 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 TBCBQ99426 244 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 KLC2Q9H0B6 622 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 SMYD3Q9H7B4 428 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 USP29Q9HBJ7 922 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 RAB6BQ9NRW1 208 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP4-205ENST00000431357 ARL8BQ9NVJ2 186 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 GJA3Q9Y6H8 435 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 LACTBL1A8MY62 500 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 I3L4J1 428 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 NFKBIEO00221 500 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 DPYSL4O14531 572 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 GYG2O15488 501 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 HBP1O60381 514 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 SMNDC1O75940 238 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP4-205ENST00000431357 SNUPNO95149 360 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 STAU1O95793 577 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 ITGB3P05106 788 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 ACADSP16219 412 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 BGNP21810 368 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 OSBPP22059 807 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 PAX7P23759 505 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 PRKCHP24723 683 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 SERPINB3P29508 390 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 YWHAZP63104 245 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 MBTD1Q05BQ5 628 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 ZRSR2Q15696 482 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 FAM187BQ17R55 369 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 CELF3Q5SZQ8 465 aaKnown RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 NPNTQ6UXI9 565 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 APLFQ8IW19 511 aaPredicted RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 VPS52Q8N1B4 723 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 MCUQ8NE86 351 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 NLRP4Q96MN2 994 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 C7orf26Q96N11 449 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 MIPEPQ99797 713 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 KCNK4Q9NYG8 393 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 BARX2Q9UMQ3 279 aaPredicted RBP11.75□□□□□ -0.53
USP4-205ENST00000431357 TTLL3Q9Y4R7 772 aa11.75□□□□□ -0.53
USP4-205ENST00000431357 ZNF487B1APH4 448 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 TRIM49D1C9J1S8 452 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 APOL1O14791 398 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 KCNN4O15554 427 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 B4GALT5O43286 388 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 PIAS1O75925 651 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 KRT38O76015 456 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 TOMM70O94826 608 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 ITGBL1O95965 494 aaPredicted RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 NFICP08651 508 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 STAG3L1P0CL83 205 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 ESRRAP11474 423 aaPredicted RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 CCNFP41002 786 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 MAGEA8P43361 318 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 HIRAP54198 1017 aaPredicted RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 INCA1Q0VD86 236 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 MMRN1Q13201 1228 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 OR6B2Q6IFH4 312 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 LCLAT1Q6UWP7 414 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 CYP4V2Q6ZWL3 525 aaPredicted RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 NCAPG2Q86XI2 1143 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 KIRREL3Q8IZU9 778 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 PLD5Q8N7P1 536 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 TTC8Q8TAM2 541 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 AFG1LQ8WV93 481 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 MCUR1Q96AQ8 359 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 OXNAD1Q96HP4 312 aaPredicted RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 SRPK1Q96SB4 655 aaKnown RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 PDGFDQ9GZP0 370 aaPredicted RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 SPATC1LQ9H0A9 340 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 C12orf65Q9H3J6 166 aaKnown RBP11.74□□□□□ -0.53
USP4-205ENST00000431357 SMARCAD1Q9H4L7 1026 aa11.74□□□□□ -0.53
USP4-205ENST00000431357 IFT122Q9HBG6 1241 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms