RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 Q3C1V9 767 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 THEMIS2Q5TEJ8 643 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 TRIM72Q6ZMU5 477 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 BBS12Q6ZW61 710 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 CAND1Q86VP6 1230 aaKnown RBP7.49□□□□□ -1.21
COL28A1-202ENST00000430711 TP53INP2Q8IXH6 220 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 PPIL6Q8IXY8 311 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 PQLC3Q8N755 202 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 CCDC110Q8TBZ0 833 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 TRPM4Q8TD43 1214 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 CPB2Q96IY4 423 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 NLRP4Q96MN2 994 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 CCDC77Q9BR77 488 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 CEP41Q9BYV8 373 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 SHCBP1LQ9BZQ2 653 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 TRIM6Q9C030 488 aaPredicted RBP7.49□□□□□ -1.21
COL28A1-202ENST00000430711 TLE6Q9H808 572 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 MANSC1Q9H8J5 431 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 KRT82Q9NSB4 513 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 ADAMTS5Q9UNA0 930 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 GJA3Q9Y6H8 435 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 TEX264Q9Y6I9 313 aa7.49□□□□□ -1.21
COL28A1-202ENST00000430711 IGKV6D-21A0A0A0MT36 114 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 TRIM49D1C9J1S8 452 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 LPXNO60711 386 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 METTL18O95568 372 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 HMGCRP04035 888 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 PFKMP08237 780 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 RBL1P28749 1068 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 CDH5P33151 784 aaPredicted RBP7.48□□□□□ -1.21
COL28A1-202ENST00000430711 RFC5P40937 340 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 GTF2A2P52657 109 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 SLC8A3P57103 927 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 MCL1Q07820 350 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 SLC10A2Q12908 348 aaPredicted RBP7.48□□□□□ -1.21
COL28A1-202ENST00000430711 SETDB1Q15047 1291 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 C16orf46Q6P387 395 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 RNF111Q6ZNA4 994 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 RIBC1Q8N443 379 aaPredicted RBP7.48□□□□□ -1.21
COL28A1-202ENST00000430711 PLD5Q8N7P1 536 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 PPM1NQ8N819 430 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 ENDOVQ8N8Q3 282 aaKnown RBP7.48□□□□□ -1.21
COL28A1-202ENST00000430711 NIPA2Q8N8Q9 360 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 ATP11CQ8NB49 1132 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 TMEM35BQ8NCS4 154 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 BBOF1Q8ND07 529 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 ZNF280CQ8ND82 737 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 ARMC2Q8NEN0 867 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 RSAD2Q8WXG1 361 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 SLC7A3Q8WY07 619 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 FAM136AQ96C01 138 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 FGD4Q96M96 766 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 TSSK1BQ9BXA7 367 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 OXCT2Q9BYC2 517 aaPredicted RBP7.48□□□□□ -1.21
COL28A1-202ENST00000430711 SLC13A1Q9BZW2 595 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 ZCWPW1Q9H0M4 648 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 USP29Q9HBJ7 922 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 SMG5Q9UPR3 1016 aaKnown RBP7.48□□□□□ -1.21
COL28A1-202ENST00000430711 LRRC42Q9Y546 428 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 HEY1Q9Y5J3 304 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 HTTP42858 3142 aa7.48□□□□□ -1.21
COL28A1-202ENST00000430711 A0A1B0GUA9 196 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 M0QYV0 167 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 FCHO1O14526 889 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 TRAFD1O14545 582 aaPredicted RBP7.47□□□□□ -1.21
COL28A1-202ENST00000430711 ITM2AO43736 263 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 RFPL1O75677 317 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 STAM2O75886 525 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 WFS1O76024 890 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 TRUB2O95900 331 aaKnown RBP7.47□□□□□ -1.21
COL28A1-202ENST00000430711 GSRP00390 522 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 ITGB3P05106 788 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 PRKCBP05771 671 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 CALB1P05937 261 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 ENO1P06733 434 aaKnown RBP7.47□□□□□ -1.21
COL28A1-202ENST00000430711 TBXAS1P24557 533 aaPredicted RBP7.47□□□□□ -1.21
COL28A1-202ENST00000430711 IGFBP6P24592 240 aaPredicted RBP7.47□□□□□ -1.21
COL28A1-202ENST00000430711 PTPN4P29074 926 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 PTPN7P35236 360 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 SERPINB4P48594 390 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 RABGGTBP53611 331 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 BST1Q10588 318 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 SLC45A4Q5BKX6 768 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 LRRC38Q5VT99 294 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 ANGEL2Q5VTE6 544 aaKnown RBP7.47□□□□□ -1.21
COL28A1-202ENST00000430711 CIAPIN1Q6FI81 312 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 JADE1Q6IE81 842 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 CAPRIN2Q6IMN6 1127 aaKnown RBP7.47□□□□□ -1.21
COL28A1-202ENST00000430711 FAM183BPQ6ZVS7 135 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 POLNQ7Z5Q5 900 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 WDR49Q8IV35 697 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 PALM2Q8IXS6 379 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 HACE1Q8IYU2 909 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 SCYL3Q8IZE3 742 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 KCTD6Q8NC69 237 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 AGBL3Q8NEM8 1001 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 RDM1Q8NG50 284 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 CCHCR1Q8TD31 782 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 SLC44A1Q8WWI5 657 aa7.47□□□□□ -1.21
COL28A1-202ENST00000430711 NDRG1Q92597 394 aaKnown RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms