RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 TECTAO75443 2155 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 C2orf78A6NCI8 922 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 TPM3P06753 285 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 USP17L7P0C7H9 530 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 FERP16591 822 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 SP100P23497 879 aaPredicted RBP13.07□□□□□ -0.32
USP40-205ENST00000430158 DDX6P26196 483 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP40-205ENST00000430158 CASP14P31944 242 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 NOMO3P69849 1222 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 PDCLQ13371 301 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 GPR158Q5T848 1215 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 TAF3Q5VWG9 929 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 PASD1Q8IV76 773 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 EFCAB3Q8N7B9 438 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 TDRD5Q8NAT2 981 aaKnown RBP13.07□□□□□ -0.32
USP40-205ENST00000430158 C1orf131Q8NDD1 294 aaKnown RBP13.07□□□□□ -0.32
USP40-205ENST00000430158 ADAMTS19Q8TE59 1207 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 KHSRPQ92945 711 aaKnown RBP eCLIP13.07□□□□□ -0.324e-7■□□□□ 10.3
USP40-205ENST00000430158 SLITRK1Q96PX8 696 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 RPP25Q9BUL9 199 aaKnown RBP13.07□□□□□ -0.32
USP40-205ENST00000430158 ULBP1Q9BZM6 244 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 TRIM5Q9C035 493 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 RNF38Q9H0F5 515 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 CNGB3Q9NQW8 809 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 TRPM5Q9NZQ8 1165 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 NR2E1Q9Y466 385 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.07□□□□□ -0.32
USP40-205ENST00000430158 MYOFQ9NZM1 2061 aa13.07□□□□□ -0.32
USP40-205ENST00000430158 A0A1W2PQH9 124 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 YJEFN3A6XGL0 299 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 E7ENQ6 273 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 PAPSS1O43252 624 aaPredicted RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 PRAMEF12O95522 483 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 LSM8O95777 96 aaKnown RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 ZBED1O96006 694 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 FYNP06241 537 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 UNGP13051 313 aaPredicted RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 PFKLP17858 780 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 GBP2P32456 591 aaPredicted RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 KRT9P35527 623 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 GABRB2P47870 512 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 TUBP50607 506 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 PDE6CP51160 858 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 SLC8A3P57103 927 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 DAOAP59103 153 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 ZXDBP98169 803 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 ARID5AQ03989 594 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 ADIGQ0VDE8 80 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 IFRD2Q12894 506 aaPredicted RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 PTP4A2Q12974 167 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 PTPN20Q4JDL3 420 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 SFMBT2Q5VUG0 894 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 TANGO2Q6ICL3 276 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 WDR59Q6PJI9 974 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 PARM1Q6UWI2 310 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 HFE2Q6ZVN8 426 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 ZNF571Q7Z3V5 609 aaPredicted RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 CMTM8Q8IZV2 173 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 MAB21L3Q8N8X9 362 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 PDZD8Q8NEN9 1154 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 SLC30A5Q8TAD4 765 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 RIN3Q8TB24 985 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 ZSCAN18Q8TBC5 510 aaPredicted RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 CLEC4CQ8WTT0 213 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 CPLX3Q8WVH0 158 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 MRPS31Q92665 395 aaKnown RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 FGF14Q92915 247 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 SMARCD2Q92925 531 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 ACSF2Q96CM8 615 aaPredicted RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 CYP2S1Q96SQ9 504 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 DNAJC7Q99615 494 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 AGPAT1Q99943 283 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 PLA2G2FQ9BZM2 168 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP40-205ENST00000430158 LIMD1Q9UGP4 676 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 ZMYM5Q9UJ78 669 aa13.06□□□□□ -0.32
USP40-205ENST00000430158 LUC7L2Q9Y383 392 aaKnown RBP13.06□□□□□ -0.32
USP40-205ENST00000430158 E5RJQ4 531 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 PIK3R2O00459 728 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 ERBB2P04626 1255 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 TCF3P15923 654 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 VIPR2P41587 438 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 ACADSBP45954 432 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 SLC7A9P82251 487 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 ZNF268Q14587 947 aaPredicted RBP13.05□□□□□ -0.32
USP40-205ENST00000430158 ASIC2Q16515 512 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 ARHGAP15Q53QZ3 475 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 ARID3BQ8IVW6 561 aaPredicted RBP13.05□□□□□ -0.32
USP40-205ENST00000430158 SCUBE3Q8IX30 993 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 GJD3Q8N144 294 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 ARL14EPQ8N8R7 260 aaPredicted RBP13.05□□□□□ -0.32
USP40-205ENST00000430158 TMEM35BQ8NCS4 154 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 ST13P5Q8NFI4 369 aaPredicted RBP13.05□□□□□ -0.32
USP40-205ENST00000430158 RSAD2Q8WXG1 361 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 IRGQQ8WZA9 623 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 USP13Q92995 863 aaPredicted RBP13.05□□□□□ -0.32
USP40-205ENST00000430158 PIWIL1Q96J94 861 aaKnown RBP13.05□□□□□ -0.32
USP40-205ENST00000430158 PPP1R13BQ96KQ4 1090 aa13.05□□□□□ -0.32
USP40-205ENST00000430158 ZFRQ96KR1 1074 aaKnown RBP13.05□□□□□ -0.32
USP40-205ENST00000430158 NUCKS1Q9H1E3 243 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms