RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 KIAA0408Q6ZU52 694 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 USP49Q70CQ1 688 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 SLC29A4Q7RTT9 530 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 RD3Q7Z3Z2 195 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 SIRT6Q8N6T7 355 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 CCDC150Q8NCX0 1101 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 LENG8Q96PV6 779 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 RIMKLBQ9ULI2 386 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 MAN2B2Q9Y2E5 1009 aa6.72□□□□□ -1.33
CCDC88A-206ENST00000430086 COL15A1P39059 1388 aa6.71□□□□□ -1.33
CCDC88A-206ENST00000430086 EXOC5O00471 708 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 SNX2O60749 519 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 MYCLP12524 364 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 GABRB3P28472 473 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 ATICP31939 592 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 BTKQ06187 659 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 DGKKQ5KSL6 1271 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 CRTC1Q6UUV9 634 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 DPY19L3Q6ZPD9 716 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 DNAJC10Q8IXB1 793 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 TXLNBQ8N3L3 684 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 MBD3L2Q8NHZ7 208 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 CYP2W1Q8TAV3 490 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 REPS1Q96D71 796 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 SLC39A13Q96H72 371 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 SNX27Q96L92 541 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 PSMD1Q99460 953 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 SLC25A32Q9H2D1 315 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 CERS4Q9HA82 394 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 NKX1-2Q9UD57 310 aaPredicted RBP6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 AMFRQ9UKV5 643 aa6.71□□□□□ -1.34
CCDC88A-206ENST00000430086 LRRC3CA6NJW4 275 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 TARM1B6A8C7 271 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 AP4M1O00189 453 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 SUV39H1O43463 412 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 JTBO76095 146 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 IDEP14735 1019 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 EEF1GP26641 437 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 RBL1P28749 1068 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 SLC5A2P31639 672 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 HTR3AP46098 478 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 NANOS3P60323 173 aaKnown RBP6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 MRNIPQ6NTE8 343 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 PTCHD4Q6ZW05 846 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 AMIGO2Q86SJ2 522 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 SFTPA1Q8IWL2 248 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 STEAP1Q9UHE8 339 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 SLC27A6Q9Y2P4 619 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 SPATA31A6Q5VVP1 1343 aa6.7□□□□□ -1.34
CCDC88A-206ENST00000430086 A8MVJ9 347 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 HNRNPDLO14979 420 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 SPRY2O43597 315 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 COQ9O75208 318 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 FGAP02671 866 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 NTSR1P30989 418 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 CYP4F2P78329 520 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 ST3GAL2Q16842 350 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 L1TD1Q5T7N2 865 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 FAXCQ5TGI0 409 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 TOGARAM2Q6ZUX3 1019 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 METTL25Q8N6Q8 603 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 ZNF566Q969W8 418 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 WDYHV1Q96HA8 205 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 CRAMP1Q96RY5 1269 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 TMOD4Q9NZQ9 345 aa6.69□□□□□ -1.34
CCDC88A-206ENST00000430086 PLEKHD1A6NEE1 506 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 OR2W5A6NFC9 320 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 CES2O00748 559 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 NDST3O95803 873 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 ARP10275 920 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 CREB1P16220 341 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 EGR1P18146 543 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 HTR7P34969 479 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 HSPA7P48741 367 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 HOXA4Q00056 320 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 PSG6Q00889 435 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 FHL3Q13643 280 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 MPEG1Q2M385 716 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 SLC5A9Q2M3M2 681 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 DENND2CQ68D51 928 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 FCRLBQ6BAA4 426 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 CLEC9AQ6UXN8 241 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 CCDC28AQ8IWP9 274 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 GLIS1Q8NBF1 620 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 ACRBPQ8NEB7 543 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 KIAA1191Q96A73 305 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 TM7SF3Q9NS93 570 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 RGL1Q9NZL6 768 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 SERGEFQ9UGK8 458 aa6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 ZMYND8Q9ULU4 1186 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-206ENST00000430086 FAM234BA2RU67 622 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 H7C1Q1 480 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 TMPRSS11DO60235 418 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 CCNT2O60583 730 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 PLA2G6O60733 806 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 PPFIA2O75334 1257 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 C1RP00736 705 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 MST1P26927 711 aa6.67□□□□□ -1.34
CCDC88A-206ENST00000430086 RNASE12Q5GAN4 147 aaKnown RBP6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms