RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 GTF3C5Q9Y5Q8 519 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SYNRGQ9UMZ2 1314 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 UBA6A0AVT1 1052 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TFECO14948 347 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF185O15231 689 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CILPO75339 1184 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TMEM191BP0C7N4 346 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CUL4BQ13620 913 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ERV3-1Q14264 604 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF800Q2TB10 664 aaPredicted RBP eCLIP2.89□□□□□ -1.955e-6■□□□□ 10.9
CCDC88A-205ENST00000426576 MAP7D1Q3KQU3 841 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TREML2Q5T2D2 321 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 DENND2CQ68D51 928 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CNSTQ6PJW8 725 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CEACAM20Q6UY09 585 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 DPY19L3Q6ZPD9 716 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MFSD6Q6ZSS7 791 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MAEAQ7L5Y9 396 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 OTOAQ7RTW8 1153 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 HEATR3Q7Z4Q2 680 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TMEM151BQ8IW70 566 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TEX2Q8IWB9 1127 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CEP112Q8N8E3 955 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MAB21L3Q8N8X9 362 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 BEST2Q8NFU1 509 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 OR6C4Q8NGE1 309 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PPP1R13LQ8WUF5 828 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TFB1MQ8WVM0 346 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 GRAMD1AQ96CP6 724 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MRRFQ96E11 262 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CHMP6Q96FZ7 201 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ADAD1Q96M93 576 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 APOOQ9BUR5 198 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PRKD2Q9BZL6 878 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TMEM245Q9H330 911 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 RAD18Q9NS91 495 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 IFT57Q9NWB7 429 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TMEM161AQ9NX61 479 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 QPCTLQ9NXS2 382 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 DDX56Q9NY93 547 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TAS2R16Q9NYV7 291 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 BTBD7Q9P203 1132 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ERVW-1Q9UQF0 538 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 KDRP35968 1356 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CPSF1Q10570 1443 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TCF20Q9UGU0 1960 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 BCLAF3A2AJT9 711 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 DVL2O14641 736 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 FSCN2O14926 492 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 EPB41L2O43491 1005 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 VEGFDO43915 354 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 RAB11FIP3O75154 756 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 DGKIO75912 1065 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TNNC2P02585 160 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 THP07101 528 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 SERPINF2P08697 491 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 AKAP5P24588 427 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 PCSK1P29120 753 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 L1CAMP32004 1257 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 DIO3P55073 304 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 OSTNP61366 133 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TNNC1P63316 161 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CYP27A1Q02318 531 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 MYO1EQ12965 1108 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 GRIK3Q13003 919 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TIGD6Q17RP2 521 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 C12orf60Q5U649 245 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CENPPQ6IPU0 288 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 NOTUMQ6P988 496 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CLEC2AQ6UVW9 174 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TMEM126BQ8IUX1 230 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 BCORP1Q8N888 145 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CLP1Q92989 425 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CXorf40BQ96DE9 158 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 NOX5Q96PH1 765 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 BTBD9Q96Q07 612 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CRISPLD2Q9H0B8 497 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ADNPQ9H2P0 1102 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF355PQ9NSJ1 428 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 RGL1Q9NZL6 768 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 KCTD3Q9Y597 815 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 PCDHB14Q9Y5E9 798 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 NRCAMQ92823 1304 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 HELZ2Q9BYK8 2649 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 C1orf226A1L170 272 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ANKRD61A6NGH8 418 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF233A6NK53 670 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF839A8K0R7 811 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 SPECC1L-ADORA2AF8WAN1 911 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 SNX2O60749 519 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TJP3O95049 919 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TTLL1O95922 423 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CSH1P0DML2 217 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CSH2P0DML3 217 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 EPCAMP16422 314 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 CKMT2P17540 419 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 AMPD1P23109 780 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 COL8A1P27658 744 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 ADORA1P30542 326 aa2.88□□□□□ -1.95
CCDC88A-205ENST00000426576 TMED10P49755 219 aaKnown RBP2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms