RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZMIZ2Q8NF64 920 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.59□□□□□ -0.71
CD44-207ENST00000425428 FEZF2Q8TBJ5 459 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 ZNF564Q8TBZ8 553 aaPredicted RBP10.59□□□□□ -0.71
CD44-207ENST00000425428 SMG7Q92540 1137 aaKnown RBP10.59□□□□□ -0.71
CD44-207ENST00000425428 LRCH3Q96II8 777 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 CORO1BQ9BR76 489 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 TTYH1Q9H313 450 aaPredicted RBP10.59□□□□□ -0.71
CD44-207ENST00000425428 CLDND1Q9NY35 253 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.59□□□□□ -0.71
CD44-207ENST00000425428 IP6K2Q9UHH9 426 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 MTCH2Q9Y6C9 303 aa10.59□□□□□ -0.71
CD44-207ENST00000425428 CLUHO75153 1309 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 ATG2AQ2TAZ0 1938 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 FAM170AA1A519 330 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 HHLA1C9JL84 531 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 KIF5CO60282 957 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 CYP1A2P05177 515 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 POU2F2P09086 479 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 MYL4P12829 197 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 NCAM1P13591 858 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 FOSL2P15408 326 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 DDX6P26196 483 aaKnown RBP eCLIP10.58□□□□□ -0.72
CD44-207ENST00000425428 ARHGAP25P42331 645 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 KPNA1P52294 538 aaPredicted RBP10.58□□□□□ -0.72
CD44-207ENST00000425428 CACNA2D1P54289 1103 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 ITIH3Q06033 890 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 ATAT1Q5SQI0 421 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 SLC26A9Q7LBE3 791 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 ARCQ7LC44 396 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 DEFB123Q8N688 67 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 CMASQ8NFW8 434 aaPredicted RBP10.58□□□□□ -0.72
CD44-207ENST00000425428 SCAMP5Q8TAC9 235 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 SLC35G2Q8TBE7 412 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 UBE2Q2Q8WVN8 375 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 MCRS1Q96EZ8 462 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 RIPOR3Q96MK2 946 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 TTLL2Q9BWV7 592 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 KCNF1Q9H3M0 494 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 SLITRK6Q9H5Y7 841 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 LZTFL1Q9NQ48 299 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 METTL5Q9NRN9 209 aaKnown RBP10.58□□□□□ -0.72
CD44-207ENST00000425428 CYTH4Q9UIA0 394 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 ANAPC7Q9UJX3 599 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 GUCA1BQ9UMX6 200 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 USP3Q9Y6I4 520 aa10.58□□□□□ -0.72
CD44-207ENST00000425428 PRRC2BQ5JSZ5 2229 aaKnown RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 BTNL10A8MVZ5 291 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 TNFRSF10BO14763 440 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 PJA2O43164 708 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 PAPSS1O43252 624 aaPredicted RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 VNN2O95498 520 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 F9P00740 461 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 PDGFRAP16234 1089 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 PFKLP17858 780 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 GPD1P21695 349 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 GABRR2P28476 465 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 NOS2P35228 1153 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 SSR1P43307 286 aaKnown RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 HYAL1Q12794 435 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 PIGHQ14442 188 aaPredicted RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 ACAP1Q15027 740 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 C2CD6Q53TS8 623 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 DCAF6Q58WW2 860 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 RARS2Q5T160 578 aaKnown RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 HECTD3Q5T447 861 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 BSPRYQ5W0U4 402 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 PLEKHA7Q6IQ23 1121 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 OLFML1Q6UWY5 402 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 TMEM184AQ6ZMB5 413 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 ZNF662Q6ZS27 426 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 PHLDB2Q86SQ0 1253 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 RNF34Q969K3 372 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 MYRFLQ96LU7 910 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 MCEEQ96PE7 176 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 CRISPLD1Q9H336 500 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 ATXN3LQ9H3M9 355 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 CLIC5Q9NZA1 410 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 CHORDC1Q9UHD1 332 aaPredicted RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 SLC12A6Q9UHW9 1150 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 ZKSCAN5Q9Y2L8 839 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 NCANO14594 1321 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 MACROD2A1Z1Q3 448 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 SOX1O00570 391 aaPredicted RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 ATMINO43313 823 aaPredicted RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 DAB1O75553 588 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 PSMA2P25787 234 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 ATP5C1P36542 298 aaKnown RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 MATKP42679 507 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 MTHFRP42898 656 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 MTA1Q13330 715 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 ADAM15Q13444 863 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 MAMLD1Q13495 774 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 MTMR3Q13615 1198 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 HADHQ16836 314 aaKnown RBP10.57□□□□□ -0.72
CD44-207ENST00000425428 C10orf120Q5SQS8 335 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 ZFYVE27Q5T4F4 411 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 ANKRD54Q6NXT1 300 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 TMC5Q6UXY8 1006 aa10.57□□□□□ -0.72
CD44-207ENST00000425428 BEND5Q7L4P6 421 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms