RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 SKIV2L2P42285 1042 aaKnown RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 NLRP11P59045 1033 aaKnown RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 ARHGAP44Q17R89 818 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 ANKRD40Q6AI12 368 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 KLHL35Q6PF15 583 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MPZL3Q6UWV2 235 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MAMDC4Q6UXC1 1216 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 C1orf186Q6ZWK4 172 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 CD99L2Q8TCZ2 262 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 TMC2Q8TDI7 906 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 CCDC77Q9BR77 488 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 TRIM55Q9BYV6 548 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 GBA3Q9H227 469 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 CCDC177Q9NQR7 707 aaPredicted RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 ZMYM2Q9UBW7 1377 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 KIAA1551Q9HCM1 1747 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 NPHP3-ACAD11A0A0J9YXS1 232 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 A0A1B0GTH6 734 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 FBXO21O94952 628 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 ITGBL1O95965 494 aaPredicted RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 KRT7P08729 469 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MCF2P10911 925 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 CPA3P15088 417 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 CASP1P29466 404 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MAGEA1P43355 309 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 KCNH2Q12809 1159 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 NEPROQ6NW34 567 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 CYP4V2Q6ZWL3 525 aaPredicted RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 SATL1Q86VE3 508 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 FAM20CQ8IXL6 584 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 USP38Q8NB14 1042 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 FBXL13Q8NEE6 735 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 SEPT8Q92599 483 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MRPL9Q9BYD2 267 aaKnown RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 EHD1Q9H4M9 534 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 RBM12Q9NTZ6 932 aaKnown RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 TIMM22Q9Y584 194 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 TRPV2Q9Y5S1 764 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MOCS3O95396 460 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 PNPLA4P41247 253 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 ZNF423Q2M1K9 1284 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 SLC35G1Q2M3R5 365 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 FOXB2Q5VYV0 432 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 CENPPQ6IPU0 288 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 DUS1LQ6P1R4 473 aaKnown RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 GRAMD1AQ96CP6 724 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MARCH7Q9H992 704 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MTRF1LQ9UGC7 380 aaKnown RBP10.18□□□□□ -0.78
USP54-205ENST00000424265 WDR91A4D1P6 747 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 RSPH10B2B2RC85 870 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 ENTPD5O75356 428 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MMP3P08254 477 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 RSPH10BP0C881 870 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 GSSP48637 474 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 LAMTOR4Q0VGL1 99 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 BFSP1Q12934 665 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 STILQ15468 1287 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 THEM5Q8N1Q8 247 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 THAP11Q96EK4 314 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 MS4A4AQ96JQ5 239 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 NLRC4Q9NPP4 1024 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 DMTF1Q9Y222 760 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 PCDHGA3Q9Y5H0 932 aa10.18□□□□□ -0.78
USP54-205ENST00000424265 GOLGA8QA0A0J9YX86 632 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 GOLGA8OA6NCC3 632 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 PPP1R3GB7ZBB8 358 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 GOLGA8NF8WBI6 632 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 GOLGA8RI6L899 631 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 MAN1A2O60476 641 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 CRYZL1O95825 349 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 MYBP10242 640 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 NUP107P57740 925 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 OCRLQ01968 901 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ZNF844Q08AG5 666 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 LRRC71Q8N4P6 559 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 TRIM31Q9BZY9 425 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 RNF208Q9H0X6 261 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 AGPAT3Q9NRZ7 376 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 PCDHB4Q9Y5E5 795 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 MAFBQ9Y5Q3 323 aaPredicted RBP10.17□□□□□ -0.78
USP54-205ENST00000424265 KIF13BQ9NQT8 1826 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 SNX3O60493 162 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ITGA4P13612 1032 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 RBP5P82980 135 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 E2F2Q14209 437 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 SNRNP35Q16560 246 aaKnown RBP10.17□□□□□ -0.78
USP54-205ENST00000424265 C17orf99Q6UX52 265 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ANKMY2Q8IV38 441 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 PYROXD1Q8WU10 500 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 CASKIN2Q8WXE0 1202 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 TSNARE1Q96NA8 513 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 SMIM35A0A1B0GVV1 85 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ZC3H11AO75152 810 aaKnown RBP eCLIP10.17□□□□□ -0.78
USP54-205ENST00000424265 MYCP01106 439 aaPredicted RBP10.17□□□□□ -0.78
USP54-205ENST00000424265 SERPING1P05155 500 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 EDNRBP24530 442 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 EPHB2P29323 1055 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 C21orf59P57076 290 aa10.17□□□□□ -0.78
USP54-205ENST00000424265 ZNF699Q32M78 642 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms