RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 SLC39A2Q9NP94 309 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 SPHK2Q9NRA0 654 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 OSER1Q9NX31 292 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 HMGXB4Q9UGU5 601 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 EVLQ9UI08 416 aaPredicted RBP8.6□□□□□ -1.03
VIM-202ENST00000421459 PILRBQ9UKJ0 227 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 NUDT5Q9UKK9 219 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 SH3BP1Q9Y3L3 701 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 RAD54BQ9Y620 910 aa8.6□□□□□ -1.03
VIM-202ENST00000421459 A0A1W2PQF6 199 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 SRRM3A6NNA2 597 aaPredicted RBP8.59□□□□□ -1.03
VIM-202ENST00000421459 LRRIQ3A6PVS8 624 aaPredicted RBP8.59□□□□□ -1.03
VIM-202ENST00000421459 WASH3PC4AMC7 463 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 PRRT4C9JH25 899 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 KIAA0391O15091 583 aaKnown RBP8.59□□□□□ -1.03
VIM-202ENST00000421459 MDM4O15151 490 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 SPTLC2O15270 562 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 EIF3DO15371 548 aaKnown RBP eCLIP8.59□□□□□ -1.03
VIM-202ENST00000421459 GREM1O60565 184 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 PHACTR2O75167 634 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 AP1G2O75843 785 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 CLSTN1O94985 981 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 VNN1O95497 513 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 PFKLP17858 780 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 PDCP20941 246 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 EIF2DP41214 584 aaKnown RBP8.59□□□□□ -1.03
VIM-202ENST00000421459 PPP3CCP48454 512 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 NASPP49321 788 aaPredicted RBP8.59□□□□□ -1.03
VIM-202ENST00000421459 MAP3K7CLP57077 242 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 DLG4P78352 724 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 SIM1P81133 766 aaPredicted RBP8.59□□□□□ -1.03
VIM-202ENST00000421459 GAD2Q05329 585 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 EHHADHQ08426 723 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 CUL4BQ13620 913 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 COL9A2Q14055 689 aaPredicted RBP8.59□□□□□ -1.03
VIM-202ENST00000421459 STK38Q15208 465 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 HECTD3Q5T447 861 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 LYSMD4Q5XG99 296 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 SPOPLQ6IQ16 392 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 TPGS1Q6ZTW0 290 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 TOGARAM2Q6ZUX3 1019 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 GPRIN1Q7Z2K8 1008 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 PIP4P1Q86T03 277 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 C11orf74Q86VG3 221 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 SLC41A1Q8IVJ1 513 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 FUKQ8N0W3 1084 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 ZNF513Q8N8E2 541 aaPredicted RBP8.59□□□□□ -1.03
VIM-202ENST00000421459 C12orf29Q8N999 325 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 XXYLT1Q8NBI6 393 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 BHMTQ93088 406 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 JAKMIP2Q96AA8 810 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 SPACA7Q96KW9 195 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 CEP295NLQ96MC4 621 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 TNMDQ9H2S6 317 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 UPF2Q9HAU5 1272 aaKnown RBP8.59□□□□□ -1.03
VIM-202ENST00000421459 KIAA1586Q9HCI6 787 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 CALCOCO1Q9P1Z2 691 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 TBC1D14Q9P2M4 693 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 DEC1Q9P2X7 70 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 CYP8B1Q9UNU6 501 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 MYO16Q9Y6X6 1858 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 CEP295Q9C0D2 2601 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 KIAA1549LQ6ZVL6 1849 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 ABCA7Q8IZY2 2146 aa8.59□□□□□ -1.03
VIM-202ENST00000421459 ANAPC1Q9H1A4 1944 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 IGHV1OR15-9A0A0B4J2B8 117 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 NEDD8-MDP1E9PL57 170 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 POLR2DO15514 142 aaKnown RBP8.58□□□□□ -1.04
VIM-202ENST00000421459 STX6O43752 255 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 EXOC3O60645 756 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 RTN3O95197 1032 aaPredicted RBP8.58□□□□□ -1.04
VIM-202ENST00000421459 C4BPAP04003 597 aaKnown RBP8.58□□□□□ -1.04
VIM-202ENST00000421459 ZDHHC11BP0C7U3 371 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 HOXB2P14652 356 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 NDUFV2P19404 249 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 MAOBP27338 520 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 AFMP43652 599 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 NDST1P52848 882 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 ZNF33AQ06730 810 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 LMAN2Q12907 356 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 SEMA3BQ13214 749 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 BIRC3Q13489 604 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 ZNF699Q32M78 642 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 SNX30Q5VWJ9 437 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 BTBD8Q5XKL5 378 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 SLC23A3Q6PIS1 610 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 STXBP4Q6ZWJ1 553 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 DDX42Q86XP3 938 aaKnown RBP eCLIP8.58□□□□□ -1.04
VIM-202ENST00000421459 CHCHD4Q8N4Q1 142 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 TERB1Q8NA31 727 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 SLC2A14Q8TDB8 520 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 SYAP1Q96A49 352 aaPredicted RBP8.58□□□□□ -1.04
VIM-202ENST00000421459 C7orf25Q9BPX7 421 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 KLF16Q9BXK1 252 aaPredicted RBP8.58□□□□□ -1.04
VIM-202ENST00000421459 NMUR1Q9HB89 426 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 CD248Q9HCU0 757 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 KRT82Q9NSB4 513 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 FAM49BQ9NUQ9 324 aa8.58□□□□□ -1.04
VIM-202ENST00000421459 DNAJC17Q9NVM6 304 aaKnown RBP8.58□□□□□ -1.04
VIM-202ENST00000421459 CACNA2D2Q9NY47 1150 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms