RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 DDX42Q86XP3 938 aaKnown RBP eCLIP15.61■□□□□ 0.09
LIMS4-201ENST00000413601 UBA3Q8TBC4 463 aa15.61■□□□□ 0.09
LIMS4-201ENST00000413601 TFAP2BQ92481 460 aa15.61■□□□□ 0.09
LIMS4-201ENST00000413601 KREMEN1Q96MU8 473 aa15.61■□□□□ 0.09
LIMS4-201ENST00000413601 UBXN6Q9BZV1 441 aa15.61■□□□□ 0.09
LIMS4-201ENST00000413601 THAP9Q9H5L6 903 aa15.61■□□□□ 0.09
LIMS4-201ENST00000413601 HESX1Q9UBX0 185 aa15.61■□□□□ 0.09
LIMS4-201ENST00000413601 KIAA1257Q9ULG3 409 aa15.61■□□□□ 0.09
LIMS4-201ENST00000413601 USP3Q9Y6I4 520 aa15.61■□□□□ 0.09
LIMS4-201ENST00000413601 CACNA1HO95180 2353 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 O00370 1275 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 PAEPP09466 180 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 IRF1P10914 325 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 SLC9A1P19634 815 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 GALK1P51570 392 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 BCAT1P54687 386 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 SLC8A3P57103 927 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 AMPD2Q01433 879 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 CSTF1Q05048 431 aaKnown RBP15.6■□□□□ 0.09
LIMS4-201ENST00000413601 NR1H3Q13133 447 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 CCINQ13939 588 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 GAS6Q14393 721 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 TMEM196Q5HYL7 178 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 RAB41Q5JT25 222 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 DGKKQ5KSL6 1271 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 Q6ZS52 159 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 SCD5Q86SK9 330 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 ADGRG2Q8IZP9 1017 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 RBBP8NLQ8NC74 664 aaPredicted RBP15.6■□□□□ 0.09
LIMS4-201ENST00000413601 WBP2Q969T9 261 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 ZSWIM1Q9BR11 485 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 FBRSL1Q9HCM7 1045 aaKnown RBP15.6■□□□□ 0.09
LIMS4-201ENST00000413601 UBE2TQ9NPD8 197 aaPredicted RBP15.6■□□□□ 0.09
LIMS4-201ENST00000413601 CYLDQ9NQC7 956 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 NAGPAQ9UK23 515 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 NUDT5Q9UKK9 219 aa15.6■□□□□ 0.09
LIMS4-201ENST00000413601 E2F8A0AVK6 867 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 TRDMT1O14717 391 aaKnown RBP15.59■□□□□ 0.09
LIMS4-201ENST00000413601 SLC9A3R1O14745 358 aaPredicted RBP15.59■□□□□ 0.09
LIMS4-201ENST00000413601 XPO1O14980 1071 aaKnown RBP15.59■□□□□ 0.09
LIMS4-201ENST00000413601 NFATC1O95644 943 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 RARGP13631 454 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 BRD2P25440 801 aaKnown RBP15.59■□□□□ 0.09
LIMS4-201ENST00000413601 ATP5C1P36542 298 aaKnown RBP15.59■□□□□ 0.09
LIMS4-201ENST00000413601 TKTL1P51854 596 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 APBA1Q02410 837 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 BST2Q10589 180 aaKnown RBP15.59■□□□□ 0.09
LIMS4-201ENST00000413601 GRSF1Q12849 480 aaKnown RBP eCLIP15.59■□□□□ 0.09
LIMS4-201ENST00000413601 FSTL4Q6MZW2 842 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 GJB7Q6PEY0 223 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 TRIM65Q6PJ69 517 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 TSSK4Q6SA08 328 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 LCLAT1Q6UWP7 414 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 GBP6Q6ZN66 633 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 FAM114A1Q8IWE2 563 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 KIAA1958Q8N8K9 716 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 P2RY13Q9BPV8 354 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.59■□□□□ 0.09
LIMS4-201ENST00000413601 FBXO4Q9UKT5 387 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 SH3BP1Q9Y3L3 701 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 R4GN57 208 aa15.59■□□□□ 0.09
LIMS4-201ENST00000413601 PROB1E7EW31 1015 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 MDM4O15151 490 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 CYP17A1P05093 508 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 KRT5P13647 590 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 PSEN1P49768 467 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 ZNF132P52740 706 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 CNGA2Q16280 664 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 MAN2A1Q16706 1144 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 PKDCCQ504Y2 493 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 C10orf120Q5SQS8 335 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 MAMSTRQ6ZN01 415 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 RBM43Q6ZSC3 357 aaKnown RBP15.58■□□□□ 0.08
LIMS4-201ENST00000413601 NDRG1Q92597 394 aaKnown RBP15.58■□□□□ 0.08
LIMS4-201ENST00000413601 IER2Q9BTL4 223 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 KLF16Q9BXK1 252 aaPredicted RBP15.58■□□□□ 0.08
LIMS4-201ENST00000413601 PRMT8Q9NR22 394 aaPredicted RBP15.58■□□□□ 0.08
LIMS4-201ENST00000413601 SAMSN1Q9NSI8 373 aaKnown RBP15.58■□□□□ 0.08
LIMS4-201ENST00000413601 TBC1D14Q9P2M4 693 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 DNMT3LQ9UJW3 386 aa15.58■□□□□ 0.08
LIMS4-201ENST00000413601 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.58■□□□□ 0.08
LIMS4-201ENST00000413601 ZBED1O96006 694 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 EGFP01133 1207 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 SETSIPP0DME0 302 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 RALAP11233 206 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 PRKCSHP14314 528 aaPredicted RBP15.57■□□□□ 0.08
LIMS4-201ENST00000413601 PON1P27169 355 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 PLA2G4AP47712 749 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 SATB1Q01826 763 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 DHCR24Q15392 516 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 EXOC3L4Q17RC7 722 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 GAB4Q2WGN9 574 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 ZNF528Q3MIS6 628 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 CT47A1Q5JQC4 288 aaPredicted RBP15.57■□□□□ 0.08
LIMS4-201ENST00000413601 MIIPQ5JXC2 388 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 KLHDC10Q6PID8 442 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 RHBDF2Q6PJF5 856 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 BBS7Q8IWZ6 715 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 SYNPOQ8N3V7 929 aa15.57■□□□□ 0.08
LIMS4-201ENST00000413601 SPEM1Q8N4L4 309 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms