RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CSE1LP55060 971 aaKnown RBP9.63□□□□□ -0.87
COL28A1-201ENST00000399429 TFAMQ00059 246 aaKnown RBP9.63□□□□□ -0.87
COL28A1-201ENST00000399429 POU5F1BQ06416 359 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 N4BP2L1Q5TBK1 243 aaPredicted RBP9.63□□□□□ -0.87
COL28A1-201ENST00000399429 CGB2Q6NT52 195 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 ZFP1Q6P2D0 407 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 ADAMTS13Q76LX8 1427 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 ZNF354CQ86Y25 554 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 PDSS2Q86YH6 399 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 CEP170P1Q96L14 293 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 BTBD9Q96Q07 612 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 POLR3CQ9BUI4 534 aaPredicted RBP9.63□□□□□ -0.87
COL28A1-201ENST00000399429 RNPEPQ9H4A4 650 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 PCDH9Q9HC56 1237 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 CYP26B1Q9NR63 512 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 CCDC78A2IDD5 438 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 CLOCKO15516 846 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 CHRNB2P17787 502 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 CRABP2P29373 138 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 POU5F1Q01860 360 aaKnown RBP9.63□□□□□ -0.87
COL28A1-201ENST00000399429 ALCAMQ13740 583 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 PRKG1Q13976 671 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 CMPK2Q5EBM0 449 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 TREML1Q86YW5 311 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 ZFP28Q8NHY6 868 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 TAS1R2Q8TE23 839 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 WNK4Q96J92 1243 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 TCF7L2Q9NQB0 619 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 MID2Q9UJV3 735 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 POMPQ9Y244 141 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 MYH15Q9Y2K3 1946 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 TISP43B9A030 160 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 J3QRK9 145 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 FBP2O00757 339 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 TAF5Q15542 800 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 SPOCD1Q6ZMY3 1216 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 MCOLN2Q8IZK6 566 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 FBXL8Q96CD0 374 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 PCDH12Q9NPG4 1184 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 GGA1Q9UJY5 639 aa9.63□□□□□ -0.87
COL28A1-201ENST00000399429 ERVV-1B6SEH8 477 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 H0Y626 953 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ALOX15BO15296 676 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 TRIM16O95361 564 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 GDF11O95390 407 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 CRTAMO95727 393 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 HOXD12P35452 270 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 SERPINB9P50453 376 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 MARSP56192 900 aaKnown RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 NLRP11P59045 1033 aaKnown RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 INPP5AQ14642 412 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 CYP4A22Q5TCH4 519 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 FOXB2Q5VYV0 432 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 PPP1R18Q6NYC8 613 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 XKR5Q6UX68 686 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 KRT27Q7Z3Y8 459 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 RNF135Q8IUD6 432 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 FNDC8Q8TC99 324 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 OMA1Q96E52 524 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 PCDHB18PQ96TA0 734 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ZNF395Q9H8N7 513 aaPredicted RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 TOPORSQ9NS56 1045 aaPredicted RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ASTN1O14525 1302 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 DCAF8L1A6NGE4 600 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ASNA1O43681 348 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 FAM86B2P0C5J1 330 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 TUFMP49411 452 aaKnown RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 CLCN2P51788 898 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 FRA10AC1Q70Z53 315 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ZNF720Q7Z2F6 126 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 PLD3Q8IV08 490 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 PCDH20Q8N6Y1 951 aaKnown RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 SCAIQ8N9R8 606 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 HELQQ8TDG4 1101 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 EXT2Q93063 718 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 FAM136AQ96C01 138 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 TXLNGYQ9BZA5 131 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ILKAPQ9H0C8 392 aaPredicted RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ACSS3Q9H6R3 686 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 KCNMB3Q9NPA1 279 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 KCNQ5Q9NR82 932 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 MTMR4Q9NYA4 1195 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 CDYLQ9Y232 598 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ORC6Q9Y5N6 252 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 WTIPA6NIX2 430 aaPredicted RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 PSMD12O00232 456 aaPredicted RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 NFIBO00712 420 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 COX4I1P13073 169 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 OSTNP61366 133 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 KRT76Q01546 638 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 MAP3K10Q02779 954 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 PPP3CAQ08209 521 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ZNF543Q08ER8 600 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 TRIM72Q6ZMU5 477 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 ENOSF1Q7L5Y1 443 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 HAS1Q92839 578 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 GLMNQ92990 594 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 EBF4Q9BQW3 602 aa9.62□□□□□ -0.87
COL28A1-201ENST00000399429 CAB39Q9Y376 341 aaPredicted RBP9.62□□□□□ -0.87
COL28A1-201ENST00000399429 LINC00854A0A1B0GVQ3 168 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms