RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 TBX4P57082 545 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 SP3Q02447 781 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 PRPF18Q99633 342 aaKnown RBP11.73□□□□□ -0.53
TTC28-201ENST00000397906 LNPEPQ9UIQ6 1025 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 SLC27A1Q6PCB7 646 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 FAM83AQ86UY5 434 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 TAS1R2Q8TE23 839 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 PPP1R3GB7ZBB8 358 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 TOMM20Q15388 145 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 TFDP3Q5H9I0 405 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 ZNF438Q7Z4V0 828 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 SMARCD1Q96GM5 515 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 MIR1-1HGQ9H1L0 117 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 OLFML3Q9NRN5 406 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 UTP6Q9NYH9 597 aaKnown RBP11.73□□□□□ -0.53
TTC28-201ENST00000397906 USE1Q9NZ43 259 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 PADI4Q9UM07 663 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 VPS9D1Q9Y2B5 631 aa11.73□□□□□ -0.53
TTC28-201ENST00000397906 NDST1P52848 882 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 BOLA3Q53S33 107 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 NOL9Q5SY16 702 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 UNC45BQ8IWX7 931 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 FAM167BQ9BTA0 163 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 TMEM121Q9BTD3 319 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 SMG5Q9UPR3 1016 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 FAM205AQ6ZU69 1335 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 PDZK1P1A8MUH7 402 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 CYP7B1O75881 506 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 SNRPAP09012 282 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 TNNI3P19429 210 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 IRAK1BP1Q5VVH5 260 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 CES5AQ6NT32 575 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 PLEKHM3Q6ZWE6 761 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 DNAAF5Q86Y56 855 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 TMEM199Q8N511 208 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 SLC20A1Q8WUM9 679 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 VPS50Q96JG6 964 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 PACSIN1Q9BY11 444 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 MRPL17Q9NRX2 175 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 NCKAP1Q9Y2A7 1128 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 SSU72P8A0A1W2PR75 194 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 CCR1P32246 355 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 CENPCQ03188 943 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 BOP1Q14137 746 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 LGI2Q8N0V4 545 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 GALNT4Q8N4A0 578 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 FAR2Q96K12 515 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 SPG21Q9NZD8 308 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 NOP53Q9NZM5 478 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 TRPV2Q9Y5S1 764 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 ITGALP20701 1170 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 ADAM21Q9UKJ8 722 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 COL5A2P05997 1499 aaPredicted RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 FAM86B1E9PN63 330 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 IRF6O14896 467 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 CPSF4O95639 269 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 FAM86B2P0C5J1 330 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 HALP42357 657 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 CORO1BQ9BR76 489 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 TBC1D3BA6NDS4 549 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 F8W810 466 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 PSMD12O00232 456 aaPredicted RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 PSTPIP1O43586 416 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 NCKAP1LP55160 1127 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 GEMIN4P57678 1058 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 CNGA3Q16281 694 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 GRIN3AQ8TCU5 1115 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 CDK5RAP1Q96SZ6 601 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 THUMPD3Q9BV44 507 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 NDUFS2O75306 463 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 FBXO21O94952 628 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 ABCB1P08183 1280 aaPredicted RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 VSNL1P62760 191 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 FOXR1Q6PIV2 292 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 C4orf19Q8IY42 314 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 VTA1Q9NP79 307 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 DYRK1BQ9Y463 629 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 LACTBL1A8MY62 500 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 CRTAMO95727 393 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 USP17L7P0C7H9 530 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 BDNFP23560 247 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 AGAP9Q5VTM2 703 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 B3GALNT2Q8NCR0 500 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 DIS3LQ8TF46 1054 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 INPP5DQ92835 1189 aa11.72□□□□□ -0.53
TTC28-201ENST00000397906 MRPL9Q9BYD2 267 aaKnown RBP11.72□□□□□ -0.53
TTC28-201ENST00000397906 TBC1D4O60343 1298 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 F9P00740 461 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 ALDH9A1P49189 494 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 OTUD4Q01804 1114 aaKnown RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 MAP3K10Q02779 954 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 DEPDC1Q5TB30 811 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 IL17RBQ9NRM6 502 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 EVPLLA8MZ36 301 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 FKTNO75072 461 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 ELAVL2Q12926 359 aaKnown RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 NFE2Q16621 373 aaPredicted RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 PRPF39Q86UA1 669 aaKnown RBP11.71□□□□□ -0.53
TTC28-201ENST00000397906 COPS5Q92905 334 aa11.71□□□□□ -0.53
TTC28-201ENST00000397906 PCDHAC2Q9Y5I4 1007 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms