RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ADIGQ0VDE8 80 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 MTF1Q14872 753 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 MLF2Q15773 248 aaPredicted RBP22.84■■□□□ 1.25
CLN3-207ENST00000395653 CC2D1AQ6P1N0 951 aaPredicted RBP22.84■■□□□ 1.25
CLN3-207ENST00000395653 SCD5Q86SK9 330 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 SIX6OS1Q8N1H7 587 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 ARHGAP18Q8N392 663 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 ZNF276Q8N554 614 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 SHDQ96IW2 340 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 MFSD1Q9H3U5 465 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.84■■□□□ 1.25
CLN3-207ENST00000395653 OSER1Q9NX31 292 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 CLIC5Q9NZA1 410 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 COL4A2P08572 1712 aa22.84■■□□□ 1.25
CLN3-207ENST00000395653 F8VZ95 297 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 PNMA6AP0CW24 399 aaPredicted RBP22.83■■□□□ 1.25
CLN3-207ENST00000395653 MBL2P11226 248 aaPredicted RBP22.83■■□□□ 1.25
CLN3-207ENST00000395653 ZXDBP98169 803 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 IER5LQ5T953 404 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 PMF1Q6P1K2 205 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 KLHDC10Q6PID8 442 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 LUZP1Q86V48 1076 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 SCML4Q8N228 414 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 KIAA1958Q8N8K9 716 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 CSGALNACT1Q8TDX6 532 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 ZFYVE19Q96K21 471 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 PCMTD1Q96MG8 357 aaPredicted RBP22.83■■□□□ 1.25
CLN3-207ENST00000395653 FAM83CQ9BQN1 747 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 ULBP1Q9BZM6 244 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 RTN4Q9NQC3 1192 aaKnown RBP22.83■■□□□ 1.25
CLN3-207ENST00000395653 CNGB3Q9NQW8 809 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 NAGPAQ9UK23 515 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 PCDHGC3Q9UN70 934 aa22.83■■□□□ 1.25
CLN3-207ENST00000395653 LEFTY2O00292 366 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 RPL34P49207 117 aaKnown RBP22.82■■□□□ 1.24
CLN3-207ENST00000395653 MLLT6P55198 1093 aaPredicted RBP22.82■■□□□ 1.24
CLN3-207ENST00000395653 STARD6P59095 220 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 POLR2FP61218 127 aaKnown RBP22.82■■□□□ 1.24
CLN3-207ENST00000395653 FILIP1LQ4L180 1135 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 DENND1BQ6P3S1 775 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 SLC47A2Q86VL8 602 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 DDX42Q86XP3 938 aaKnown RBP eCLIP22.82■■□□□ 1.24
CLN3-207ENST00000395653 SUGP1Q8IWZ8 645 aaKnown RBP22.82■■□□□ 1.24
CLN3-207ENST00000395653 STK32AQ8WU08 396 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 CDK5RAP1Q96SZ6 601 aaKnown RBP22.82■■□□□ 1.24
CLN3-207ENST00000395653 NACA2Q9H009 215 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 HEBP1Q9NRV9 189 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 EPHB6O15197 1021 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 RARGP13631 454 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 ATP5C1P36542 298 aaKnown RBP22.82■■□□□ 1.24
CLN3-207ENST00000395653 RGS7P49802 495 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 PDGFRLQ15198 375 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 BHLHA9Q7RTU4 235 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 TADA2BQ86TJ2 420 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 NEK11Q8NG66 645 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 OSCP1Q8WVF1 389 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 ZFRQ96KR1 1074 aaKnown RBP22.82■■□□□ 1.24
CLN3-207ENST00000395653 DDX23Q9BUQ8 820 aaKnown RBP22.82■■□□□ 1.24
CLN3-207ENST00000395653 TBC1D17Q9HA65 648 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 GKN1Q9NS71 199 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 SMPD4Q9NXE4 827 aa22.82■■□□□ 1.24
CLN3-207ENST00000395653 TICRRQ7Z2Z1 1910 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 A0A1B0GTH6 734 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 GOLGA6L19H0YKK7 550 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 RALAP11233 206 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 LCP1P13796 627 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 GLULP15104 373 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 JAM2P57087 298 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 YWHAGP61981 247 aaKnown RBP eCLIP22.81■■□□□ 1.24
CLN3-207ENST00000395653 CWF19L1Q69YN2 538 aaKnown RBP22.81■■□□□ 1.24
CLN3-207ENST00000395653 TTC16Q8NEE8 873 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 FLCNQ8NFG4 579 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 MSANTD3Q96H12 275 aa22.81■■□□□ 1.24
CLN3-207ENST00000395653 TEX33O43247 280 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 GABBR2O75899 941 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 CYP11B1P15538 503 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 ACADSBP45954 432 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 CLCN5P51795 746 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 DAOAP59103 153 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 LRSAM1Q6UWE0 723 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 TPRG1Q6ZUI0 275 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 IRGQQ8WZA9 623 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 SLC4A5Q9BY07 1137 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 LHX5Q9H2C1 402 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 NLRC4Q9NPP4 1024 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 DUS2Q9NX74 493 aaKnown RBP22.8■■□□□ 1.24
CLN3-207ENST00000395653 GTSE1Q9NYZ3 720 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 DNMT3LQ9UJW3 386 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 PIAS3Q9Y6X2 628 aa22.8■■□□□ 1.24
CLN3-207ENST00000395653 FBXO21O94952 628 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 TBX18O95935 607 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 SERPINC1P01008 464 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 KRT9P35527 623 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 IFNAR2P48551 515 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 TNK2Q07912 1038 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 C10orf120Q5SQS8 335 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 ASTLQ6HA08 431 aaPredicted RBP22.79■■□□□ 1.24
CLN3-207ENST00000395653 SPAG5Q96R06 1193 aa22.79■■□□□ 1.24
CLN3-207ENST00000395653 C8orf33Q9H7E9 229 aaPredicted RBP22.79■■□□□ 1.24
CLN3-207ENST00000395653 HPS4Q9NQG7 708 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms