RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 AGBL2Q5U5Z8 902 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 OR6B2Q6IFH4 312 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 C11orf63Q6NUN7 778 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 CLEC20AQ6ZU45 233 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 FAM35AQ86V20 835 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 CPNE8Q86YQ8 564 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 SCUBE3Q8IX30 993 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 GPATCH11Q8N954 259 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 HTATIP2Q9BUP3 242 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 RHOBTB2Q9BYZ6 727 aa13.02□□□□□ -0.33
CIITA-202ENST00000381835 RC3H2Q9HBD1 1191 aaKnown RBP13.02□□□□□ -0.33
CIITA-202ENST00000381835 CXXC1Q9P0U4 656 aaPredicted RBP13.02□□□□□ -0.33
CIITA-202ENST00000381835 GOLGA6L7A0A1B0GV03 622 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 BHMG1C9JSJ3 638 aaPredicted RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 TTI1O43156 1089 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 AP1G2O75843 785 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 OAZ2O95190 189 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 KRT3P12035 628 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 LCP1P13796 627 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 COMTP21964 271 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 RABGGTBP53611 331 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 ELAVL2Q12926 359 aaKnown RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 ZNF268Q14587 947 aaPredicted RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 TMEM240Q5SV17 173 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 FAM102AQ5T9C2 384 aaPredicted RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 FAM171BQ6P995 826 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 KCNT2Q6UVM3 1135 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 FAM183BPQ6ZVS7 135 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 TAS1R1Q7RTX1 841 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 PIGZQ86VD9 579 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 RASGEF1CQ8N431 466 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 DPF3Q92784 378 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 SLC4A5Q9BY07 1137 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 MIS12Q9H081 205 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 METTL5Q9NRN9 209 aaKnown RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 WDR35Q9P2L0 1181 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 UTP11Q9Y3A2 253 aaKnown RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 XPO1O14980 1071 aaKnown RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 SPOPO43791 374 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 GABBR2O75899 941 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 BDNFP23560 247 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 KRT71Q3SY84 523 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 CTXN3Q4LDR2 81 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 SLC39A12Q504Y0 691 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 RTP2Q5QGT7 225 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 TMC3Q7Z5M5 1100 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 TMEM110Q86TL2 294 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 STK32AQ8WU08 396 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 PIWIL1Q96J94 861 aaKnown RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 CCDC114Q96M63 670 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 KCNK16Q96T55 309 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 ZBED2Q9BTP6 218 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 DPH5Q9H2P9 285 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 ACTR5Q9H9F9 607 aaPredicted RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 KLC4Q9NSK0 619 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 TMEM30AQ9NV96 361 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 MRPL42Q9Y6G3 142 aaKnown RBP13.01□□□□□ -0.33
CIITA-202ENST00000381835 PTPRDP23468 1912 aa13.01□□□□□ -0.33
CIITA-202ENST00000381835 NLRC5Q86WI3 1866 aa13□□□□□ -0.33
CIITA-202ENST00000381835 TMEM191CA6NGB0 347 aa13□□□□□ -0.33
CIITA-202ENST00000381835 SIGLEC16A6NMB1 481 aa13□□□□□ -0.33
CIITA-202ENST00000381835 GRAP2O75791 330 aa13□□□□□ -0.33
CIITA-202ENST00000381835 FGFR3P22607 806 aa13□□□□□ -0.33
CIITA-202ENST00000381835 RFC1P35251 1148 aaPredicted RBP13□□□□□ -0.33
CIITA-202ENST00000381835 CACNA2D1P54289 1103 aa13□□□□□ -0.33
CIITA-202ENST00000381835 MAGOHP61326 146 aaKnown RBP13□□□□□ -0.33
CIITA-202ENST00000381835 DHX9Q08211 1270 aaKnown RBP13□□□□□ -0.33
CIITA-202ENST00000381835 IFFO1Q0D2I5 559 aa13□□□□□ -0.33
CIITA-202ENST00000381835 MAPRE1Q15691 268 aaKnown RBP13□□□□□ -0.33
CIITA-202ENST00000381835 QPCTQ16769 361 aa13□□□□□ -0.33
CIITA-202ENST00000381835 PPP1R15BQ5SWA1 713 aa13□□□□□ -0.33
CIITA-202ENST00000381835 DAB2IPQ5VWQ8 1189 aa13□□□□□ -0.33
CIITA-202ENST00000381835 PSRC1Q6PGN9 363 aaPredicted RBP13□□□□□ -0.33
CIITA-202ENST00000381835 CMTR2Q8IYT2 770 aaKnown RBP13□□□□□ -0.33
CIITA-202ENST00000381835 EMC1Q8N766 993 aa13□□□□□ -0.33
CIITA-202ENST00000381835 JOSD2Q8TAC2 188 aa13□□□□□ -0.33
CIITA-202ENST00000381835 MAGOHBQ96A72 148 aaKnown RBP13□□□□□ -0.33
CIITA-202ENST00000381835 MCRS1Q96EZ8 462 aa13□□□□□ -0.33
CIITA-202ENST00000381835 SMARCD1Q96GM5 515 aa13□□□□□ -0.33
CIITA-202ENST00000381835 IGSF21Q96ID5 467 aa13□□□□□ -0.33
CIITA-202ENST00000381835 ZNF558Q96NG5 402 aa13□□□□□ -0.33
CIITA-202ENST00000381835 PKMYT1Q99640 499 aa13□□□□□ -0.33
CIITA-202ENST00000381835 SMOQ99835 787 aa13□□□□□ -0.33
CIITA-202ENST00000381835 FAM114A2Q9NRY5 505 aa13□□□□□ -0.33
CIITA-202ENST00000381835 PAPSS1O43252 624 aaPredicted RBP13□□□□□ -0.33
CIITA-202ENST00000381835 GJB5O95377 273 aa13□□□□□ -0.33
CIITA-202ENST00000381835 ARPP19P56211 112 aa13□□□□□ -0.33
CIITA-202ENST00000381835 SNX16P57768 344 aa13□□□□□ -0.33
CIITA-202ENST00000381835 ZNF280DQ6N043 979 aa13□□□□□ -0.33
CIITA-202ENST00000381835 SPATA2LQ8IUW3 424 aaPredicted RBP13□□□□□ -0.33
CIITA-202ENST00000381835 CLEC4CQ8WTT0 213 aa13□□□□□ -0.33
CIITA-202ENST00000381835 RAPGEF5Q92565 580 aa13□□□□□ -0.33
CIITA-202ENST00000381835 SEC16BQ96JE7 1060 aa13□□□□□ -0.33
CIITA-202ENST00000381835 TTPALQ9BTX7 342 aa13□□□□□ -0.33
CIITA-202ENST00000381835 USTQ9Y2C2 406 aa13□□□□□ -0.33
CIITA-202ENST00000381835 PROSCO94903 275 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 RDXP35241 583 aaKnown RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 GSCP56915 257 aaPredicted RBP12.99□□□□□ -0.33
CIITA-202ENST00000381835 OGDHQ02218 1023 aa12.99□□□□□ -0.33
CIITA-202ENST00000381835 TAP1Q03518 808 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms