RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 WWP1Q9H0M0 922 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 MRPL46Q9H2W6 279 aaKnown RBP12□□□□□ -0.49
SYNE1-204ENST00000367248 LRRC74AQ0VAA2 488 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 PTK7Q13308 1070 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 NBPF20Q3BBV1 942 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 DOK6Q6PKX4 331 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 KIRREL3Q8IZU9 778 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 L3MBTL1Q9Y468 752 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 SNCAIPQ9Y6H5 919 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 HMGCRP04035 888 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 ACRP10323 421 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 HMOX2P30519 316 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 ITGB3BPQ13352 177 aaPredicted RBP12□□□□□ -0.49
SYNE1-204ENST00000367248 TMEM259Q4ZIN3 620 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 EXD1Q8NHP7 514 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 CD274Q9NZQ7 290 aa12□□□□□ -0.49
SYNE1-204ENST00000367248 PNMA8BQ9ULN7 279 aaPredicted RBP12□□□□□ -0.49
SYNE1-204ENST00000367248 OPHN1O60890 802 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 BDNFP23560 247 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 RGS4P49798 205 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 WASHC5Q12768 1159 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 SGCGQ13326 291 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 PTK6Q13882 451 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 ETNPPLQ8TBG4 499 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 SGSM3Q96HU1 749 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 GBP5Q96PP8 586 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 TLR8Q9NR97 1041 aaKnown RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 RRN3Q9NYV6 651 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 C6orf203Q9P0P8 240 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 PCDHGB4Q9UN71 923 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 ORC6Q9Y5N6 252 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 GYG2O15488 501 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 PKN3Q6P5Z2 889 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 C3orf62Q6ZUJ4 267 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 CEP68Q76N32 757 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 SLC2A14Q8TDB8 520 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 USP13Q92995 863 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 LYPLA2O95372 231 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 DNAJC19Q96DA6 116 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 DMAP1Q9NPF5 467 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 NFAT5O94916 1531 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 SCNN1BP51168 640 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 DDX39BQ13838 428 aaKnown RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 DUSP28Q4G0W2 176 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 NLRP14Q86W24 1093 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 NKX2-3Q8TAU0 364 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 IL17RAQ96F46 866 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 KLF6Q99612 283 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 FBXO44Q9H4M3 255 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 SLC27A5Q9Y2P5 690 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 PRLRP16471 622 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 PRKCQQ04759 706 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 MTMR14Q8NCE2 650 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 GRAMD1AQ96CP6 724 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 ELOVL4Q9GZR5 314 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 KPNA3O00505 521 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 CDH8P55286 799 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 MTFR1Q15390 333 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 TFDP3Q5H9I0 405 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 IFNLR1Q8IU57 520 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 OR2W6PQ8NHA6 318 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 SMARCD1Q96GM5 515 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 VCPIP1Q96JH7 1222 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 NR1H4Q96RI1 486 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 APOL2Q9BQE5 337 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 ROPN1BQ9BZX4 212 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 CDT1Q9H211 546 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 TASP1Q9H6P5 420 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 ROPN1Q9HAT0 212 aaPredicted RBP11.99□□□□□ -0.49
SYNE1-204ENST00000367248 PCMTD2Q9NV79 361 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 USP18Q9UMW8 372 aa11.99□□□□□ -0.49
SYNE1-204ENST00000367248 CCNJLQ8IV13 435 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 LRRC37BQ96QE4 947 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 MYOCQ99972 504 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 FAM129AQ9BZQ8 928 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 SLC39A10Q9ULF5 831 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 SUPT3HB4E1H0 165 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 ZSCAN9O15535 394 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 NDUFS2O75306 463 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 SUPT3HO75486 399 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CXCL14O95715 111 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 ARHGDIAP52565 204 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 RTP1P59025 263 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 MRPS6P82932 125 aaKnown RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 PCBP1Q15365 356 aaKnown RBP eCLIP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 RETSATQ6NUM9 610 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 ZDHHC17Q8IUH5 632 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 HERC6Q8IVU3 1022 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 GPR152Q8TDT2 470 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CELF6Q96J87 481 aaKnown RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 SENP8Q96LD8 212 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 PPP1R37O75864 691 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 ATP5HO75947 161 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 JCHAINP01591 159 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 CTCFP49711 727 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 HTRA3P83110 453 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 PPP3CAQ08209 521 aa11.98□□□□□ -0.49
SYNE1-204ENST00000367248 SFSWAPQ12872 951 aaKnown RBP11.98□□□□□ -0.49
SYNE1-204ENST00000367248 TIGD7Q6NT04 549 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms