RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 VEPH1Q14D04 833 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 BTBD8Q5XKL5 378 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 KAZNQ674X7 775 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 TXNDC8Q6A555 127 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 AADACL2Q6P093 401 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 FAM171BQ6P995 826 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 MON1BQ7L1V2 547 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 XYLT1Q86Y38 959 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 FMNL3Q8IVF7 1028 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 REXO1L1PQ8IX06 675 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 MAB21L3Q8N8X9 362 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 LRRN4Q8WUT4 740 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 RXFP2Q8WXD0 754 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 GOLGA1Q92805 767 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 TTYH1Q9H313 450 aaPredicted RBP9.66□□□□□ -0.86
USP4-202ENST00000351842 CCSER2Q9H7U1 834 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 FAM204AQ9H8W3 233 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 NMUR1Q9HB89 426 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 CNTN6Q9UQ52 1028 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 ATP8B3O60423 1300 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 CCDC195A0A1B0GUA6 201 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 TRDMT1O14717 391 aaKnown RBP9.65□□□□□ -0.86
USP4-202ENST00000351842 URI1O94763 535 aaPredicted RBP9.65□□□□□ -0.86
USP4-202ENST00000351842 CYP1A1P04798 512 aaPredicted RBP9.65□□□□□ -0.86
USP4-202ENST00000351842 CKMP06732 381 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 ARHGAP25P42331 645 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 DYNLT1P63172 113 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 PLCB3Q01970 1234 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 OGDHQ02218 1023 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 DMTNQ08495 405 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 BSPRYQ5W0U4 402 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 B4GALNT4Q76KP1 1039 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 DNAJB7Q7Z6W7 309 aaPredicted RBP9.65□□□□□ -0.86
USP4-202ENST00000351842 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.65□□□□□ -0.86
USP4-202ENST00000351842 RNF139Q8WU17 664 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 MYLIPQ8WY64 445 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 SYT11Q9BT88 431 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 DDIT4Q9NX09 232 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 INSL5Q9Y5Q6 135 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 SNX10Q9Y5X0 201 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 ZDBF2Q9HCK1 2354 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 H3BNC9 293 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 M0QYT0 321 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 YWHAQP27348 245 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 ERVK-21P61565 698 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 SLC8B1Q6J4K2 584 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 PEX26Q7Z412 305 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 ZNF677Q86XU0 584 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 NUP93Q8N1F7 819 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 HAUS1Q96CS2 278 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 ERLEC1Q96DZ1 483 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 TCEAL4Q96EI5 215 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 RASAL2Q9UJF2 1139 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 KIAA1257Q9ULG3 409 aa9.65□□□□□ -0.86
USP4-202ENST00000351842 XPO1O14980 1071 aaKnown RBP9.65□□□□□ -0.87
USP4-202ENST00000351842 CALB1P05937 261 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 SETSIPP0DME0 302 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 SULT1E1P49888 294 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 EPHB3P54753 998 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 DLX2Q07687 328 aaPredicted RBP9.65□□□□□ -0.87
USP4-202ENST00000351842 SPPL2BQ8TCT7 592 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 SP7Q8TDD2 431 aaPredicted RBP9.65□□□□□ -0.87
USP4-202ENST00000351842 RFFLQ8WZ73 363 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 ZBTB9Q96C00 473 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 SLITRK1Q96PX8 696 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 HERC2P3Q9BVR0 1158 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 HEMGNQ9BXL5 484 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 GKN1Q9NS71 199 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 PARVAQ9NVD7 372 aa9.65□□□□□ -0.87
USP4-202ENST00000351842 AFF4Q9UHB7 1163 aaKnown RBP9.65□□□□□ -0.87
USP4-202ENST00000351842 PLXNA4Q9HCM2 1894 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 C2orf78A6NCI8 922 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 NRG2O14511 850 aaPredicted RBP9.64□□□□□ -0.87
USP4-202ENST00000351842 ZNF185O15231 689 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 CHRM1P11229 460 aaPredicted RBP9.64□□□□□ -0.87
USP4-202ENST00000351842 COMTP21964 271 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 SDC4P31431 198 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 MRPL58Q14197 206 aaKnown RBP9.64□□□□□ -0.87
USP4-202ENST00000351842 ADGRE1Q14246 886 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 ARHGAP17Q68EM7 881 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 TXNRD3NBQ6F5E7 133 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 TRIM72Q6ZMU5 477 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 RNF25Q96BH1 459 aaPredicted RBP9.64□□□□□ -0.87
USP4-202ENST00000351842 OSER1Q9NX31 292 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP4-202ENST00000351842 PCDHGC3Q9UN70 934 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 SLC38A8A6NNN8 435 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 SRGAP2BP0DMP2 458 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 HAPLN1P10915 354 aaPredicted RBP9.64□□□□□ -0.87
USP4-202ENST00000351842 YWHAZP63104 245 aaKnown RBP9.64□□□□□ -0.87
USP4-202ENST00000351842 CDK17Q00537 523 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 TRNP1Q6NT89 227 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 GET4Q7L5D6 327 aaPredicted RBP9.64□□□□□ -0.87
USP4-202ENST00000351842 TAB3Q8N5C8 712 aaPredicted RBP9.64□□□□□ -0.87
USP4-202ENST00000351842 TTC8Q8TAM2 541 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 FAM172AQ8WUF8 416 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 SMG7Q92540 1137 aaKnown RBP9.64□□□□□ -0.87
USP4-202ENST00000351842 KRT35Q92764 455 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 SLC22A12Q96S37 553 aa9.64□□□□□ -0.87
USP4-202ENST00000351842 CALN1Q9BXU9 219 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms