RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TRMUO75648 421 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 ZMPSTE24O75844 475 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 TSHRP16473 764 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 SERPINB8P50452 374 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 COPAP53621 1224 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 WNT7BP56706 349 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 YWHAGP61981 247 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS39-202ENST00000348544 USP41Q3LFD5 358 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 LRRC38Q5VT99 294 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 TTC39BQ5VTQ0 682 aaPredicted RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 CDC42EP5Q6NZY7 148 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 IYDQ6PHW0 289 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 C15orf39Q6ZRI6 1047 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 ENOSF1Q7L5Y1 443 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 RTKN2Q8IZC4 609 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 DEFB107AQ8IZN7 70 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 LRRC43Q8N309 656 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 PPM1NQ8N819 430 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 FNDC8Q8TC99 324 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 TFB1MQ8WVM0 346 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 PPP1R14BQ96C90 147 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 VCPIP1Q96JH7 1222 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 ZFRQ96KR1 1074 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 CNBD2Q96M20 576 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 FBXL18Q96ME1 805 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 MCEEQ96PE7 176 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 TEKT3Q9BXF9 490 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 MRPL1Q9BYD6 325 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 SUDS3Q9H7L9 328 aaPredicted RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 XAB2Q9HCS7 855 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 SMYD2Q9NRG4 433 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 INIPQ9NRY2 104 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 PARVAQ9NVD7 372 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 PLK2Q9NYY3 685 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 POLLQ9UGP5 575 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 TBX20Q9UMR3 447 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 SH3GLB1Q9Y371 365 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 AP4B1Q9Y6B7 739 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 ZHX2Q9Y6X8 837 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 TCRBV5S1A1TA0A578 114 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 HMX2A2RU54 273 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 FBXO21O94952 628 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 ITGBL1O95965 494 aaPredicted RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 GSRP00390 522 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 BPGMP07738 259 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 POLR2MP0CAP2 368 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 CD1EP15812 388 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 CDH2P19022 906 aaPredicted RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 EIF4BP23588 611 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 CD97P48960 835 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 SCNN1DP51172 638 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 SNRPFP62306 86 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 JAG1P78504 1218 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 BASP1P80723 227 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 MPP3Q13368 585 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 LPIN1Q14693 890 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 ANGEL2Q5VTE6 544 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 CC2D2BQ6DHV5 1058 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 LRRC8BQ6P9F7 803 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 BORAQ6PGQ7 559 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 FRMD7Q6ZUT3 714 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 TRMT1LQ7Z2T5 733 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 ANKRD23Q86SG2 305 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 SLC26A11Q86WA9 606 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 ALDH16A1Q8IZ83 802 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 AHI1Q8N157 1196 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 PQLC1Q8N2U9 271 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 CCDC33Q8N5R6 958 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 FAM71DQ8N9W8 422 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 TMEM161BQ8NDZ6 487 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 PRPF31Q8WWY3 499 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 SLC35B4Q969S0 331 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 CFAP36Q96G28 342 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 CCDC17Q96LX7 622 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 NLRP4Q96MN2 994 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 PRPF18Q99633 342 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 YIPF2Q9BWQ6 316 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 LIN28AQ9H9Z2 209 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 XPNPEP1Q9NQW7 623 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 TUBGCP4Q9UGJ1 667 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 PACSIN3Q9UKS6 424 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 ITGA11Q9UKX5 1188 aa7.05□□□□□ -1.28
VPS39-202ENST00000348544 COL14A1Q05707 1796 aaKnown RBP7.05□□□□□ -1.28
VPS39-202ENST00000348544 PTPRJQ12913 1337 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ZNF335Q9H4Z2 1342 aaPredicted RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 CST8O60676 142 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 ATP5BP06576 529 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 SNRPAP09012 282 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 SRGAP2CP0DJJ0 459 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 SRGAP2BP0DMP2 458 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 MMP8P22894 467 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 GNA15P30679 374 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 CACNB3P54284 484 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 CDKL1Q00532 357 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 CREB5Q02930 508 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 PPIDQ08752 370 aaKnown RBP7.04□□□□□ -1.28
VPS39-202ENST00000348544 STX3Q13277 289 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 KRT81Q14533 505 aa7.04□□□□□ -1.28
VPS39-202ENST00000348544 SMTNL2Q2TAL5 461 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms