RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 GLTPD2A6NH11 291 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 KBTBD13C9JR72 458 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 CLDN5O00501 218 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 MSH2P43246 934 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 SLC6A3Q01959 620 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 POU5F1BQ06416 359 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 LVRNQ6Q4G3 990 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 PPP1R21Q6ZMI0 780 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 IFNLR1Q8IU57 520 aaPredicted RBP10.78□□□□□ -0.68
LIMA1-201ENST00000341247 RELL1Q8IUW5 271 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 PLD5Q8N7P1 536 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 BEST2Q8NFU1 509 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 PCDH19Q8TAB3 1148 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 SLC2A14Q8TDB8 520 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 SNX27Q96L92 541 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 FOXP3Q9BZS1 431 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 VRTNQ9H8Y1 702 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 STRNO43815 780 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 CELF2O95319 508 aaKnown RBP10.78□□□□□ -0.68
LIMA1-201ENST00000341247 IL4RP24394 825 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 ADRA1DP25100 572 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 RDXP35241 583 aaKnown RBP10.78□□□□□ -0.68
LIMA1-201ENST00000341247 GBE1Q04446 702 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 SOX4Q06945 474 aaPredicted RBP10.78□□□□□ -0.68
LIMA1-201ENST00000341247 ITIH4Q14624 930 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 NOTUMQ6P988 496 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 PCGF5Q86SE9 256 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 FAM131BQ86XD5 332 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 PQLC3Q8N755 202 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 MAGEB18Q96M61 343 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 KDM4CQ9H3R0 1056 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 PCDH18Q9HCL0 1135 aa10.78□□□□□ -0.68
LIMA1-201ENST00000341247 APOL1O14791 398 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 GPR32O75388 356 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 GBP2P32456 591 aaPredicted RBP10.77□□□□□ -0.69
LIMA1-201ENST00000341247 PCK1P35558 622 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 GNL1P36915 607 aaPredicted RBP10.77□□□□□ -0.69
LIMA1-201ENST00000341247 HDAC4P56524 1084 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 RNASELQ05823 741 aaKnown RBP10.77□□□□□ -0.69
LIMA1-201ENST00000341247 OVGP1Q12889 678 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 NOMO1Q15155 1222 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 KBTBD12Q3ZCT8 623 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 C9orf57Q5W0N0 161 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 BSPRYQ5W0U4 402 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 OLFML2BQ68BL8 750 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 CEP128Q6ZU80 1094 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 FUKQ8N0W3 1084 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 KHSRPQ92945 711 aaKnown RBP eCLIP10.77□□□□□ -0.69
LIMA1-201ENST00000341247 ZFP42Q96MM3 310 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 STK38LQ9Y2H1 464 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 ZSWIM8A7E2V4 1837 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 NEFHP12036 1026 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 PHBP35232 272 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 KCNJ2P63252 427 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 PITX1P78337 314 aaPredicted RBP10.77□□□□□ -0.69
LIMA1-201ENST00000341247 TFDP2Q14188 446 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 CYB5D1Q6P9G0 228 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 CTU1Q7Z7A3 348 aaKnown RBP10.77□□□□□ -0.69
LIMA1-201ENST00000341247 TLK2Q86UE8 772 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 MAP7D3Q8IWC1 876 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 FITM2Q8N6M3 262 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 SLC35F5Q8WV83 523 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 SNX25Q9H3E2 840 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 SLC5A4Q9NY91 659 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 KLHL14Q9P2G3 628 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 SLC17A7Q9P2U7 560 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 TIMM13Q9Y5L4 95 aaPredicted RBP10.77□□□□□ -0.69
LIMA1-201ENST00000341247 MAD1L1Q9Y6D9 718 aa10.77□□□□□ -0.69
LIMA1-201ENST00000341247 SMIM28A0A1B0GU29 152 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 MEIS3P2A8K0S8 358 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 ASMTLO95671 621 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 MGAT5Q09328 741 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 GRB14Q14449 540 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 SPARCL1Q14515 664 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 DCAF4L1Q3SXM0 396 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 FBXO47Q5MNV8 452 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 PRPF39Q86UA1 669 aaKnown RBP10.76□□□□□ -0.69
LIMA1-201ENST00000341247 ZNF410Q86VK4 478 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 CCDC185Q8N715 623 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 PPM1NQ8N819 430 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 LRRC8CQ8TDW0 803 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 ECT2Q9H8V3 914 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 BAIAP2L1Q9UHR4 511 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 PHTF1Q9UMS5 762 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 EFR3BQ9Y2G0 817 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 IKBKGQ9Y6K9 419 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 MYO18AQ92614 2054 aaKnown RBP10.76□□□□□ -0.69
LIMA1-201ENST00000341247 RARBP10826 455 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 DARSP14868 501 aaKnown RBP10.76□□□□□ -0.69
LIMA1-201ENST00000341247 CYP2F1P24903 491 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 TAZQ16635 292 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 TWF2Q6IBS0 349 aaKnown RBP10.76□□□□□ -0.69
LIMA1-201ENST00000341247 CEP57Q86XR8 500 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 ETNK2Q9NVF9 386 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 ARL2BPQ9Y2Y0 163 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 COL1A2P08123 1366 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 TCRBV9S1A1TA0A576 114 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 RBM47A0AV96 593 aaKnown RBP10.76□□□□□ -0.69
LIMA1-201ENST00000341247 A6NJR5 290 aa10.76□□□□□ -0.69
LIMA1-201ENST00000341247 RASSF9O75901 435 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms