RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ARHGDIBP52566 201 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 POU5F1Q01860 360 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 RAD51AP2Q09MP3 1159 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TDGQ13569 410 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ANKS6Q68DC2 871 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 FAM199XQ6PEV8 388 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 Q6ZUG5 572 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TREML1Q86YW5 311 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 C1orf131Q8NDD1 294 aaKnown RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 CPNE2Q96FN4 548 aaPredicted RBP3.4□□□□□ -1.87
CSMD3-202ENST00000339701 BTBD6Q96KE9 485 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 RACGAP1Q9H0H5 632 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 TBC1D22BQ9NU19 505 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 SNX14Q9Y5W7 946 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 MED23Q9ULK4 1368 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 RALGAPA2Q2PPJ7 1873 aa3.4□□□□□ -1.87
CSMD3-202ENST00000339701 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 LZTS3O60299 673 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SORBS3O60504 671 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ZC3H11AO75152 810 aaKnown RBP eCLIP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NDUFA10O95299 355 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TOP3BO95985 862 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 GH2P01242 217 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CKMP06732 381 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PGK2P07205 417 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NR3C2P08235 984 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CTSHP09668 335 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF3P17036 446 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NPR3P17342 541 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ACAT1P24752 427 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CHMLP26374 656 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 STIP1P31948 543 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 FAUP35544 74 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 RAB27AP51159 221 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SMIM11AP58511 58 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MTMR1Q13613 665 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TNNI3KQ59H18 835 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 FOXD4L5Q5VV16 416 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 LRRC47Q8N1G4 583 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 USP38Q8NB14 1042 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 RDM1Q8NG50 284 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 FOXD4L4Q8WXT5 416 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SH3KBP1Q96B97 665 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 XAGE2Q96GT9 111 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MTMR9Q96QG7 549 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PLA2G12BQ9BX93 195 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MRPL1Q9BYD6 325 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NCOA5Q9HCD5 579 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NMRK2Q9NPI5 230 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MKS1Q9NXB0 559 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PCDHA12Q9UN75 941 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 BAIAP2Q9UQB8 552 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PLAAQ9Y263 795 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TLDC2A0PJX2 215 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NDUFB5O43674 189 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SLC9A1P19634 815 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PIK3R1P27986 724 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PHKA1P46020 1223 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 SARSP49591 514 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CDK7P50613 346 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CLCN6P51797 869 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 MXD4Q14582 209 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TNFAIP8L3Q5GJ75 292 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 LRRC8AQ8IWT6 810 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CD302Q8IX05 232 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 AMER2Q8N7J2 671 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ANKRD7Q92527 254 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 BDH2Q9BUT1 245 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ZDHHC4Q9NPG8 344 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 INSL6Q9Y581 213 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 KIAA1217Q5T5P2 1943 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CCDC162PA2VCL2 907 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PSMC3P17980 439 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CDH6P55285 790 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 FANCCQ00597 558 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 GPM6BQ13491 265 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TRIM25Q14258 630 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TDRD10Q5VZ19 366 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 TAF2Q6P1X5 1199 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 OTOP2Q7RTS6 562 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 Q96MT0 163 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PRDM4Q9UKN5 801 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 A0A088AWK7 358 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 DDTLA6NHG4 134 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 PEPDP12955 493 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF24P17028 368 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 CTPS1P17812 591 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 ZNF10P21506 573 aaPredicted RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 EEF1B2P24534 225 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 GYG1P46976 350 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 COPS2P61201 443 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 KRT72Q14CN4 511 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 KARSQ15046 597 aaKnown RBP3.39□□□□□ -1.87
CSMD3-202ENST00000339701 EXOC3L4Q17RC7 722 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 LIN54Q6MZP7 749 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 NATD1Q8N6N6 113 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 DNAJB8Q8NHS0 232 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 AGR3Q8TD06 166 aa3.39□□□□□ -1.87
CSMD3-202ENST00000339701 LRRC39Q96DD0 335 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms