RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SPATA2LQ8IUW3 424 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 DEFB106AQ8N104 65 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SIX6OS1Q8N1H7 587 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SCAMP5Q8TAC9 235 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 ADAM32Q8TC27 787 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 TOP1MTQ969P6 601 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 MAGOHBQ96A72 148 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 HAUS1Q96CS2 278 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 GDAP1L1Q96MZ0 367 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 C11orf84Q9BUA3 381 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 OSBPL8Q9BZF1 889 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 ZCWPW1Q9H0M4 648 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 EPB41L5Q9HCM4 733 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 DMAP1Q9NPF5 467 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 CYLDQ9NQC7 956 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 CHST7Q9NS84 486 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 STIM2Q9P246 746 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 PTPRDP23468 1912 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 hCG_1818297A0A087WSY0 165 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SYNJ2BP-COX16A0A087WUM0 186 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 GOLGA6L10A0A0M3HER8 536 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 ABHD14A-ACY1A0A1B0GW23 586 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 ARHGEF37A1IGU5 675 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SYN3O14994 580 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 ADAM12O43184 909 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 PHF2O75151 1096 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 ZBED1O96006 694 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 RPL17P18621 184 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 PCK1P35558 622 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SCNN1AP37088 669 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 CDKN2BP42772 138 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 PTGIRP43119 386 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 CARSP49589 748 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 EPHB4P54760 987 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 DAOAP59103 153 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 YWHAZP63104 245 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 DYNLT1P63172 113 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 MRPL58Q14197 206 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 DDR2Q16832 855 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 HADHQ16836 314 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 DCAF6Q58WW2 860 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 EFHC1Q5JVL4 640 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 CCNI2Q6ZMN8 369 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 POLNQ7Z5Q5 900 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SCN4BQ8IWT1 228 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 RCOR2Q8IZ40 523 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 TMEM199Q8N511 208 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 ATAD1Q8NBU5 361 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 GPR152Q8TDT2 470 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 CASKIN2Q8WXE0 1202 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SPOCK2Q92563 424 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 EDEM1Q92611 657 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 RBM41Q96IZ5 413 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 NAP1L3Q99457 506 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 TMEM175Q9BSA9 504 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 DDX23Q9BUQ8 820 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 SNRNP25Q9BV90 132 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 TRIM31Q9BZY9 425 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 CRISPLD1Q9H336 500 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SLITRK6Q9H5Y7 841 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 RC3H2Q9HBD1 1191 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 TMPRSS4Q9NRS4 437 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.33□□□□□ -1.72
MCF2-201ENST00000338585 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.33□□□□□ -1.72
MCF2-201ENST00000338585 COX16Q9P0S2 106 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SAE1Q9UBE0 346 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 LCMT1Q9UIC8 334 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 NAALADL1Q9UQQ1 740 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SLC27A5Q9Y2P5 690 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 MRPL42Q9Y6G3 142 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 ALPK3Q96L96 1907 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 CCDC151A5D8V7 595 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 ZBBXA8MT70 800 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 C2CD2LO14523 706 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 TNFRSF10BO14763 440 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 PRPSAP2O60256 369 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 HSF2BPO75031 334 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 DAB1O75553 588 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 VNN2O95498 520 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 AMHP03971 560 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 KRT7P08729 469 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CPB1P15086 417 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 KDELR1P24390 212 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 COILP38432 576 aaPredicted RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 GRIK1P39086 918 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 MATKP42679 507 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 PTPN9P43378 593 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 ALDH7A1P49419 539 aaKnown RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 SULT1E1P49888 294 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 SLC5A3P53794 718 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 CDH6P55285 790 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 DR1Q01658 176 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 ACAP1Q15027 740 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 BRD3Q15059 726 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 MAPRE1Q15691 268 aaKnown RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 CYP1B1Q16678 543 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 GLE1Q53GS7 698 aaKnown RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 TFDP3Q5H9I0 405 aa4.32□□□□□ -1.72
MCF2-201ENST00000338585 SPOUT1Q5T280 376 aaKnown RBP4.32□□□□□ -1.72
MCF2-201ENST00000338585 ZNF280DQ6N043 979 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms