RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 FLOT2Q14254 428 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 NBPF12Q5TAG4 269 aaPredicted RBP15.26■□□□□ 0.03
TCOF1-201ENST00000323668 DENND1BQ6P3S1 775 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 METTL7BQ6UX53 244 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 DAW1Q8N136 415 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 DNERQ8NFT8 737 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 CCDC138Q96M89 665 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 ZNF212Q9UDV6 495 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 DTNAQ9Y4J8 743 aa15.26■□□□□ 0.03
TCOF1-201ENST00000323668 ARHGEF37A1IGU5 675 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 PSMG1O95456 288 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 TSHRP16473 764 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 NUDT2P50583 147 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 ATXN3P54252 364 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-201ENST00000323668 SATB1Q01826 763 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 SPDYE1Q8NFV5 336 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-201ENST00000323668 MAGEB5Q9BZ81 275 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 MMADHCQ9H3L0 296 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-201ENST00000323668 TMEM134Q9H6X4 195 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 AP4E1Q9UPM8 1137 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 PRPF4O43172 522 aaKnown RBP eCLIP15.25■□□□□ 0.03
TCOF1-201ENST00000323668 DPEP1P16444 411 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 GNL1P36915 607 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-201ENST00000323668 SLC51AQ86UW1 340 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 CPNE8Q86YQ8 564 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 GALNT4Q8N4A0 578 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 PTPRN2Q92932 1015 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 LRRC39Q96DD0 335 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 A8MUI8 341 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 MTSS1O43312 755 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 DGKIO75912 1065 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 SLC25A27O95847 323 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 THRAP10827 490 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 CPA3P15088 417 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 OAZ1P54368 228 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 LRRC8EQ6NSJ5 796 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 SLC25A41Q8N5S1 370 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 FAM13CQ8NE31 585 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 SLC10A4Q96EP9 437 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 TSPAN16Q9UKR8 245 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 BARX2Q9UMQ3 279 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-201ENST00000323668 SLC12A4Q9UP95 1085 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 CDYLQ9Y232 598 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 ZMYM2Q9UBW7 1377 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 RGPD5Q99666 1765 aa15.25■□□□□ 0.03
TCOF1-201ENST00000323668 GNGT2O14610 69 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 CD4P01730 458 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 CYP2F1P24903 491 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 PRAMEP78395 509 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 SLC12A1Q13621 1099 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 JADE3Q92613 823 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 DTNBP1Q96EV8 351 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 HIC2Q96JB3 615 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 ZNF184Q99676 751 aaPredicted RBP15.24■□□□□ 0.03
TCOF1-201ENST00000323668 CCDC134Q9H6E4 229 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 BAG5Q9UL15 447 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 COQ4Q9Y3A0 265 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 FAM237BA0A1B0GVD1 139 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 GOLGA8CPA6NN73 597 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 ACKR2O00590 384 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 WFS1O76024 890 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 SLC4A1P02730 911 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 TGFB3P10600 412 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 RBL1P28749 1068 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 ACVR2BQ13705 512 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 N4BP2L1Q5TBK1 243 aaPredicted RBP15.24■□□□□ 0.03
TCOF1-201ENST00000323668 ZSWIM2Q8NEG5 633 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 NSMCE4AQ9NXX6 385 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 PIN4Q9Y237 131 aaKnown RBP15.24■□□□□ 0.03
TCOF1-201ENST00000323668 MICAL2O94851 1124 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 CCNE2O96020 404 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 TCN1P20061 433 aaPredicted RBP15.24■□□□□ 0.03
TCOF1-201ENST00000323668 SLC1A5Q15758 541 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 SPOCK2Q92563 424 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 EML4Q9HC35 981 aaKnown RBP15.24■□□□□ 0.03
TCOF1-201ENST00000323668 DFFAO00273 331 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 PSMD3O43242 534 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 APOA4P06727 396 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 NDST1P52848 882 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 PHEXP78562 749 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 MON1BQ7L1V2 547 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 NRBF2Q96F24 287 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 LRRC40Q9H9A6 602 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 NDUFA13Q9P0J0 144 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 WRAP73Q9P2S5 460 aaPredicted RBP15.24■□□□□ 0.03
TCOF1-201ENST00000323668 FNDC3AQ9Y2H6 1198 aaKnown RBP15.24■□□□□ 0.03
TCOF1-201ENST00000323668 MROH7Q68CQ1 1323 aa15.24■□□□□ 0.03
TCOF1-201ENST00000323668 ZC3H4Q9UPT8 1303 aaKnown RBP15.24■□□□□ 0.03
TCOF1-201ENST00000323668 NUP188Q5SRE5 1749 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 A0A0B4J269 797 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 TBC1D12O60347 775 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 ASS1P00966 412 aaKnown RBP15.23■□□□□ 0.03
TCOF1-201ENST00000323668 HMGCRP04035 888 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 SERPINE1P05121 402 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 SETSIPP0DME0 302 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 EN1Q05925 392 aaPredicted RBP15.23■□□□□ 0.03
TCOF1-201ENST00000323668 MGAT5Q09328 741 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 VSTM1Q6UX27 236 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 FAM131BQ86XD5 332 aa15.23■□□□□ 0.03
TCOF1-201ENST00000323668 STKLD1Q8NE28 680 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms