RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TIPARPQ7Z3E1 657 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 CREG2Q8IUH2 290 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PARP8Q8N3A8 854 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 TCEAL4Q96EI5 215 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 SMIM12Q96EX1 92 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 CCDC120Q96HB5 630 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 C7orf50Q9BRJ6 194 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 RAB11FIP5Q9BXF6 653 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 UNKLQ9H9P5 680 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 TMLHEQ9NVH6 421 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PCDHGB7Q9Y5F8 929 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 HECW1Q76N89 1606 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 USP19O94966 1318 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 INSRP06213 1382 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 CAPN14A8MX76 684 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 MTA2O94776 668 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 OR6A2O95222 327 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF844Q08AG5 666 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 MGAT5Q09328 741 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PUS10Q3MIT2 529 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 HSD17B12Q53GQ0 312 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 YTHDF3Q7Z739 585 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 RAB43Q86YS6 212 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 CLVS1Q8IUQ0 354 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC17A8Q8NDX2 589 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 FAR1Q8WVX9 515 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 TMX3Q96JJ7 454 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 STK33Q9BYT3 514 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 WDR37Q9Y2I8 494 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 USP20Q9Y2K6 914 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PCDHGA11Q9Y5H2 935 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 C13orf42A0A1B0GVH6 325 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF705EA8MWA4 302 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 B2RBV5 119 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 FAM47E-STBD1D6RA91 191 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 H7C2Y5 167 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 MGRN1O60291 552 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 AP2A2O94973 939 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PHKG2P15735 406 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 STAT1P42224 750 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 ARCN1P48444 511 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC10A7Q0GE19 358 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 FAM69CQ0P6D2 419 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 COTL1Q14019 142 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 RAB12Q6IQ22 244 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 CLEC4GQ6UXB4 293 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 GTF2H5Q6ZYL4 71 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF550Q7Z398 422 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 OR2L5Q8NG80 312 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 TRPC4APQ8TEL6 797 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 REPS1Q96D71 796 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 RIPOR3Q96MK2 946 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 MIPEPQ99797 713 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PDCD1LG2Q9BQ51 273 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 PRRG3Q9BZD7 231 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 BLZF1Q9H2G9 400 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 SP140LQ9H930 580 aa7.87□□□□□ -1.15
LIMCH1-201ENST00000313860 ZMYM4Q5VZL5 1548 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 AURKAO14965 403 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 PER2O15055 1255 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 IGHDP01880 384 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF35P13682 527 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 VAMP1P23763 118 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ITGA1P56199 1179 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ZNF155Q12901 538 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 GPS1Q13098 491 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 TCEA2Q15560 299 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ODR4Q5SWX8 454 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 TPGS1Q6ZTW0 290 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ZBED3Q96IU2 234 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 SLC39A3Q9BRY0 314 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 EML4Q9HC35 981 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 RGS18Q9NS28 235 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 POLR3BQ9NW08 1133 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 LNPEPQ9UIQ6 1025 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 KCNS2Q9ULS6 477 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ALG5Q9Y673 324 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 LOC100653049A0A140TA62 436 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 KRT34O76011 436 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 IFNA21P01568 189 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ENO2P09104 434 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 DBTP11182 482 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 CHI3L1P36222 383 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ALDH3B1P43353 468 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 PTK7Q13308 1070 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 P3H1Q32P28 736 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 SEL1L3Q68CR1 1132 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ZBTB46Q86UZ6 589 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 ZSCAN18Q8TBC5 510 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 TRAPPC12Q8WVT3 735 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 GLG1Q92896 1179 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 EXOC4Q96A65 974 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 DMRTB1Q96MA1 342 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 PLEKHF1Q96S99 279 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 C1orf50Q9BV19 199 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 NFE2L3Q9Y4A8 694 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 POTEMA6NI47 508 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 OR2AT4A6NND4 320 aa7.86□□□□□ -1.15
LIMCH1-201ENST00000313860 PPEF2O14830 753 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms