RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 ASGR1P07306 291 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 GARTP22102 1010 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 CCND3P30281 292 aaPredicted RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 FOXN2P32314 431 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 SURF1Q15526 300 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 KRT39Q6A163 491 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 NANOGNBQ7Z5D8 188 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 TRIML2Q8N7C3 387 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 BBOF1Q8ND07 529 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 SLAIN1Q8ND83 568 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 CPB2Q96IY4 423 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 THAP2Q9H0W7 228 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 PCDHA2Q9Y5H9 948 aa11.35□□□□□ -0.59
LSM3-201ENST00000306024 COL11A1P12107 1806 aaPredicted RBP11.35□□□□□ -0.59
LSM3-201ENST00000306024 A0A0A6YYK5 440 aaPredicted RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 GSC2O15499 205 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 EXTL3O43909 919 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 OAS1P00973 400 aaKnown RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 FTLP02792 175 aaPredicted RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 ARL2P36404 184 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 PPIDQ08752 370 aaKnown RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 MGAT5Q09328 741 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 PRELID2Q8N945 189 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 POP1Q99575 1024 aaKnown RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 TMEM109Q9BVC6 243 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 YIPF2Q9BWQ6 316 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 OSBPL8Q9BZF1 889 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 LNPEPQ9UIQ6 1025 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 ZNF180Q9UJW8 692 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 SMIM31A0A1B0GVY4 71 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 BTNL10A8MVZ5 291 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 SMAPO00193 183 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 ATN1P54259 1190 aaPredicted RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 KCNA10Q16322 511 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 CMPK2Q5EBM0 449 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 TAF2Q6P1X5 1199 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 LRRC6Q86X45 466 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 TSSK1BQ9BXA7 367 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 NXF1Q9UBU9 619 aaKnown RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 KAT6AQ92794 2004 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 IGKV6D-21A0A0A0MT36 114 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 ACKR2O00590 384 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 TREHO43280 583 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 USP1O94782 785 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 COMTP21964 271 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 MAN1A1P33908 653 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 UBAP2Q5T6F2 1119 aaKnown RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 C1orf228Q6PIY5 440 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 RBM44Q6ZP01 1051 aaKnown RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 CLNKQ7Z7G1 428 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 SCUBE1Q8IWY4 988 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 KLF6Q99612 283 aaPredicted RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 HEMGNQ9BXL5 484 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 PFDN4Q9NQP4 134 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 GRHL1Q9NZI5 618 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 ARMCX1Q9P291 453 aa11.34□□□□□ -0.59
LSM3-201ENST00000306024 TDRKHQ9Y2W6 561 aaKnown RBP11.34□□□□□ -0.59
LSM3-201ENST00000306024 OGTO15294 1046 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 STK10O94804 968 aaKnown RBP11.33□□□□□ -0.6
LSM3-201ENST00000306024 ASLP04424 464 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ANPEPP15144 967 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 GPC3P51654 580 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ZNF200P98182 395 aaPredicted RBP11.33□□□□□ -0.6
LSM3-201ENST00000306024 LSAMPQ13449 338 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 IZUMO3Q5VZ72 239 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 SATL1Q86VE3 508 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 SLC13A5Q86YT5 568 aaPredicted RBP11.33□□□□□ -0.6
LSM3-201ENST00000306024 TAB3Q8N5C8 712 aaPredicted RBP11.33□□□□□ -0.6
LSM3-201ENST00000306024 DEFB118Q96PH6 123 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 RBM15Q96T37 977 aaKnown RBP eCLIP11.33□□□□□ -0.6
LSM3-201ENST00000306024 C16orf70Q9BSU1 422 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ANLNQ9NQW6 1124 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ARL8BQ9NVJ2 186 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ARHGAP28Q9P2N2 729 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 TTC7AQ9ULT0 858 aaPredicted RBP11.33□□□□□ -0.6
LSM3-201ENST00000306024 UMODL1Q5DID0 1318 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 CASQ2O14958 399 aaPredicted RBP11.33□□□□□ -0.6
LSM3-201ENST00000306024 C22orf31O95567 290 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 CD19P15391 556 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 PON1P27169 355 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ANXA13P27216 316 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 SOX5P35711 763 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 CAV1Q03135 178 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 MYBPC2Q14324 1141 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 MPZL3Q6UWV2 235 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ZBTB8BQ8NAP8 495 aaPredicted RBP11.33□□□□□ -0.6
LSM3-201ENST00000306024 ALG3Q92685 438 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 KRT35Q92764 455 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ABHD8Q96I13 439 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ACAP3Q96P50 834 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 TRAIPQ9BWF2 469 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 INTS2Q9H0H0 1204 aaKnown RBP11.33□□□□□ -0.6
LSM3-201ENST00000306024 CYP4F11Q9HBI6 524 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 TOPORSQ9NS56 1045 aaPredicted RBP11.33□□□□□ -0.6
LSM3-201ENST00000306024 USTQ9Y2C2 406 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 PTCH2Q9Y6C5 1203 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 A8MXQ7 604 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 GNRH1P01148 92 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 PYGMP11217 842 aa11.33□□□□□ -0.6
LSM3-201ENST00000306024 ZPBP2Q6X784 338 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms