RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TNIP3Q96KP6 325 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 B3GNT5Q9BYG0 378 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 ZNF518BQ9C0D4 1074 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 SPHK2Q9NRA0 654 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 AGPAT3Q9NRZ7 376 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 TMEM74BQ9NUR3 256 aa15.68■□□□□ 0.1
CCDC88B-201ENST00000301897 WDFY3Q8IZQ1 3526 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 A0A087X0B3 334 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 ANTXRLA6NF34 631 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 SCAMP3O14828 347 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 OPHN1O60890 802 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 SYPP08247 313 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 ITPKAP23677 461 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 NTSR1P30989 418 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 CACNA2D1P54289 1103 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 SIM1P81133 766 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 FAM26FQ5R3K3 315 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 SDE2Q6IQ49 451 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 CNNM4Q6P4Q7 775 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 EPM2AIP1Q7L775 607 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 PDILTQ8N807 584 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 RDH13Q8NBN7 331 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 SMARCD1Q96GM5 515 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 ZFRQ96KR1 1074 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 TRIM9Q9C026 710 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 NACA2Q9H009 215 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 ZSCAN16Q9H4T2 348 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 VRTNQ9H8Y1 702 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 DMAP1Q9NPF5 467 aaPredicted RBP15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 TMEM30AQ9NV96 361 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 KBTBD4Q9NVX7 518 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 IL37Q9NZH6 218 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 RALYQ9UKM9 306 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 STARD13Q9Y3M8 1113 aa15.67■□□□□ 0.1
CCDC88B-201ENST00000301897 SRRM3A6NNA2 597 aaPredicted RBP15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 CLDN5O00501 218 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 PHACTR2O75167 634 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 TULP3O75386 442 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 TOP3BO95985 862 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 HOXB2P14652 356 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 HOXD13P35453 343 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 AP3M2P53677 418 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 ASIC1P78348 528 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 GOLGA8FQ08AF8 430 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 GOLGA8DPQ0D2H9 430 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 ZNF423Q2M1K9 1284 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 ANO4Q32M45 955 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 C10orf76Q5T2E6 689 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 CCDC127Q96BQ5 260 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 XPO6Q96QU8 1125 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 MED10Q9BTT4 135 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 DPEP3Q9H4B8 488 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 FBXO44Q9H4M3 255 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 CAPN10Q9HC96 672 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 NXF1Q9UBU9 619 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 MYH10P35580 1976 aa15.66■□□□□ 0.1
CCDC88B-201ENST00000301897 A0A1W2PQD8 194 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 FAM92AA1XBS5 289 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 TGFB1I1O43294 461 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 HYAL3O43820 417 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 ZDHHC11BP0C7U3 371 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 GABRG2P18507 467 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 TRIM21P19474 475 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 SYT1P21579 422 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 CYP2J2P51589 502 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 SLC5A3P53794 718 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 MYL6P60660 151 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 ZNF33AQ06730 810 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 SLC14A1Q13336 389 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 GRAMD4Q6IC98 578 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 KIAA1211LQ6NV74 962 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 FAM35AQ86V20 835 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 BBS7Q8IWZ6 715 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 FRMD1Q8N878 549 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 NAT16Q8N8M0 369 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 IQUBQ8NA54 791 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 GLIS3Q8NEA6 775 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 GTPBP2Q9BX10 602 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 XYLT2Q9H1B5 865 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 FAM124BQ9H5Z6 455 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 MAGEF1Q9HAY2 307 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 CALCOCO1Q9P1Z2 691 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 WDR35Q9P2L0 1181 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 SUSD2Q9UGT4 822 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 CHORDC1Q9UHD1 332 aaPredicted RBP15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 NME7Q9Y5B8 376 aa15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 ATXN2Q99700 1313 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-201ENST00000301897 FAM221BA6H8Z2 402 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 ARHGAP33O14559 1287 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 CACNG3O60359 315 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 AP1G2O75843 785 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 P4HA1P13674 534 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 NASPP49321 788 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 ACACAQ13085 2346 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 STK38Q15208 465 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 ZNF699Q32M78 642 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 ZNF667Q5HYK9 610 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 SYCP2LQ5T4T6 812 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 FAM173BQ6P4H8 233 aa15.64■□□□□ 0.09
CCDC88B-201ENST00000301897 HTR3DQ70Z44 454 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms