RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 USP20Q9Y2K6 914 aa15.92■□□□□ 0.14
SHH-201ENST00000297261 A8MXQ7 604 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 DYNC1LI2O43237 492 aaPredicted RBP15.91■□□□□ 0.14
SHH-201ENST00000297261 ARMC3Q5W041 872 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 EFCAB12Q6NXP0 572 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 ARHGEF19Q8IW93 802 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 LNX1Q8TBB1 728 aaPredicted RBP15.91■□□□□ 0.14
SHH-201ENST00000297261 RNF217Q8TC41 542 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 DDI1Q8WTU0 396 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 CLEC4DQ8WXI8 215 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 IKZF4Q9H2S9 585 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 TASP1Q9H6P5 420 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 NMRK1Q9NWW6 199 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 SNX13Q9Y5W8 968 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 C10orf71Q711Q0 1435 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 ASTN1O14525 1302 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 TM9SF1O15321 606 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 PSTPIP1O43586 416 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 ZFXP17010 805 aaPredicted RBP15.91■□□□□ 0.14
SHH-201ENST00000297261 ZNF157P51786 506 aaPredicted RBP15.91■□□□□ 0.14
SHH-201ENST00000297261 RWDD4Q6NW29 188 aaKnown RBP15.91■□□□□ 0.14
SHH-201ENST00000297261 LENG9Q96B70 501 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 ANGPTL3Q9Y5C1 460 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 TRPC1P48995 793 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 HDAC4P56524 1084 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 TAF12Q16514 161 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 UGCGQ16739 394 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 IER5Q5VY09 327 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 USP50Q70EL3 339 aaPredicted RBP15.91■□□□□ 0.14
SHH-201ENST00000297261 ERAP1Q9NZ08 941 aa15.91■□□□□ 0.14
SHH-201ENST00000297261 NAV1Q8NEY1 1877 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 EXTL3O43909 919 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 GCLCP48506 637 aaPredicted RBP15.9■□□□□ 0.14
SHH-201ENST00000297261 INPP1P49441 399 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 ADARP55265 1226 aaKnown RBP15.9■□□□□ 0.14
SHH-201ENST00000297261 MRPS15P82914 257 aaKnown RBP15.9■□□□□ 0.14
SHH-201ENST00000297261 TRIM16LQ309B1 348 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 METTL7BQ6UX53 244 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 ZCCHC23Q6ZST2 131 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 GTF3C2Q8WUA4 911 aaPredicted RBP15.9■□□□□ 0.14
SHH-201ENST00000297261 SLC12A6Q9UHW9 1150 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 DNPEPQ9ULA0 475 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 THSD7AQ9UPZ6 1657 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 PMLP29590 882 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 GTF2A2P52657 109 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 CDK16Q00536 496 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 BNIP1Q12981 228 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 TBCCQ15814 346 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 TFDP3Q5H9I0 405 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 LRRC15Q8TF66 581 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 TRAPPC9Q96Q05 1148 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 NR2E1Q9Y466 385 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 V9GYQ6 96 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 MYH1P12882 1939 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 DNALI1O14645 258 aaPredicted RBP15.9■□□□□ 0.14
SHH-201ENST00000297261 CHEK2O96017 543 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 SERPINB8P50452 374 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 SLC26A11Q86WA9 606 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 CCDC33Q8N5R6 958 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 GIPC2Q8TF65 315 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 MBOAT7Q96N66 472 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 GRIP2Q9C0E4 1043 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 TTYH3Q9C0H2 523 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 FBXO6Q9NRD1 293 aaPredicted RBP15.9■□□□□ 0.14
SHH-201ENST00000297261 PCYOX1Q9UHG3 505 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 ARHGEF37A1IGU5 675 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 HBP1O60381 514 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 TBL3Q12788 808 aaKnown RBP15.9■□□□□ 0.14
SHH-201ENST00000297261 MAPRE2Q15555 327 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 C4orf50Q6ZRC1 276 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 DDIASQ8IXT1 998 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 EXD1Q8NHP7 514 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 FAM81AQ8TBF8 368 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 SGF29Q96ES7 293 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 SYT17Q9BSW7 474 aa15.9■□□□□ 0.14
SHH-201ENST00000297261 GBA2Q9HCG7 927 aaPredicted RBP15.9■□□□□ 0.14
SHH-201ENST00000297261 USP2O75604 605 aaPredicted RBP15.89■□□□□ 0.13
SHH-201ENST00000297261 PROCP04070 461 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 ELK3P41970 407 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 CLCN3P51790 818 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 TNFAIP2Q03169 654 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 ECHDC2Q86YB7 292 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 RIOX2Q8IUF8 465 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 NDNQ99608 321 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 RSAD1Q9HA92 442 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 RAG1P15918 1043 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 CREB1P16220 341 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 ZNF268Q14587 947 aaPredicted RBP15.89■□□□□ 0.13
SHH-201ENST00000297261 USP10Q14694 798 aaKnown RBP15.89■□□□□ 0.13
SHH-201ENST00000297261 ANO4Q32M45 955 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 LPCAT2Q7L5N7 544 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 GPR141Q7Z602 305 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 NOP9Q86U38 636 aaKnown RBP15.89■□□□□ 0.13
SHH-201ENST00000297261 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.89■□□□□ 0.13
SHH-201ENST00000297261 SKA2Q8WVK7 121 aaPredicted RBP15.89■□□□□ 0.13
SHH-201ENST00000297261 SPOCK2Q92563 424 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 GORASP1Q9BQQ3 440 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 PAIP1Q9H074 479 aaKnown RBP15.89■□□□□ 0.13
SHH-201ENST00000297261 COL4A1P02462 1669 aa15.89■□□□□ 0.13
SHH-201ENST00000297261 FAM237BA0A1B0GVD1 139 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms