RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 PDGFRBP09619 1106 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 KRT3P12035 628 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 DESP17661 470 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 IBSPP21815 317 aaPredicted RBP17.57■□□□□ 0.4
CPSF4-201ENST00000292476 DRD4P21917 467 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 CETN2P41208 172 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 ACADSBP45954 432 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 LIG3P49916 1009 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 AFF1P51825 1210 aaKnown RBP17.57■□□□□ 0.4
CPSF4-201ENST00000292476 RNASELQ05823 741 aaKnown RBP17.57■□□□□ 0.4
CPSF4-201ENST00000292476 PKDCCQ504Y2 493 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 GKAP1Q5VSY0 366 aaPredicted RBP17.57■□□□□ 0.4
CPSF4-201ENST00000292476 WSCD1Q658N2 575 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 C16orf59Q7L2K0 433 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 DEFB128Q7Z7B8 93 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 PACS2Q86VP3 889 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 RELL1Q8IUW5 271 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 C12orf29Q8N999 325 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 FNIP1Q8TF40 1166 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 LINC01599Q8WXQ3 324 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 CDH9Q9ULB4 789 aa17.57■□□□□ 0.4
CPSF4-201ENST00000292476 TCRBV5S1A1TA0A578 114 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 TMEM189-UBE2V1I3L0A0 370 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 CYP11A1P05108 521 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 FGFR1P11362 822 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 IVDP26440 423 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 KCNJ1P48048 391 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 LMNB2Q03252 620 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 ACAP1Q15027 740 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 C2CD6Q53TS8 623 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 PPP1R15BQ5SWA1 713 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 CNPY4Q8N129 248 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 THEM5Q8N1Q8 247 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 UBA3Q8TBC4 463 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 CCHCR1Q8TD31 782 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 ATXN2LQ8WWM7 1075 aaKnown RBP17.56■□□□□ 0.4
CPSF4-201ENST00000292476 CPXM1Q96SM3 734 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 HNRNPABQ99729 332 aaKnown RBP17.56■□□□□ 0.4
CPSF4-201ENST00000292476 MRPL9Q9BYD2 267 aaKnown RBP17.56■□□□□ 0.4
CPSF4-201ENST00000292476 ADAM7Q9H2U9 754 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 IL23AQ9NPF7 189 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 FAM49BQ9NUQ9 324 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 DDX43Q9NXZ2 648 aaKnown RBP17.56■□□□□ 0.4
CPSF4-201ENST00000292476 ASIC3Q9UHC3 531 aa17.56■□□□□ 0.4
CPSF4-201ENST00000292476 M0QZQ0 153 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 NDC80O14777 642 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 TP73O15350 636 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 ATF2P15336 505 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 PTPN1P18031 435 aaKnown RBP17.55■□□□□ 0.4
CPSF4-201ENST00000292476 TYMPP19971 482 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 LMO2P25791 158 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 DSC1Q08554 894 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 LRRC38Q5VT99 294 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 CCDC121Q6ZUS5 278 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 TMEM110Q86TL2 294 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 XYLT1Q86Y38 959 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 NIPA2Q8N8Q9 360 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 CCDC89Q8N998 374 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 SLC35F5Q8WV83 523 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 C1orf54Q8WWF1 131 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 MCRS1Q96EZ8 462 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 SEC16BQ96JE7 1060 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 HSFY1Q96LI6 401 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 MCEEQ96PE7 176 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 ZNF317Q96PQ6 595 aaPredicted RBP17.55■□□□□ 0.4
CPSF4-201ENST00000292476 NCAPGQ9BPX3 1015 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 SLC4A5Q9BY07 1137 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 LRRC4CQ9HCJ2 640 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 AAASQ9NRG9 546 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 NEU2Q9Y3R4 380 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 CHN1P15882 459 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 PTPN7P35236 360 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 AUHQ13825 339 aaKnown RBP17.55■□□□□ 0.4
CPSF4-201ENST00000292476 GPNMBQ14956 572 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 MAPRE1Q15691 268 aaKnown RBP17.55■□□□□ 0.4
CPSF4-201ENST00000292476 TIGD5Q53EQ6 642 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 TMEM240Q5SV17 173 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 DRICH1Q6PGQ1 229 aaPredicted RBP17.55■□□□□ 0.4
CPSF4-201ENST00000292476 ZNF365Q70YC5 407 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 CPLX4Q7Z7G2 160 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 RBM41Q96IZ5 413 aaKnown RBP17.55■□□□□ 0.4
CPSF4-201ENST00000292476 SUSD3Q96L08 255 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 ACBD6Q9BR61 282 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 CDC42EP4Q9H3Q1 356 aaKnown RBP17.55■□□□□ 0.4
CPSF4-201ENST00000292476 DPEP3Q9H4B8 488 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 CHST7Q9NS84 486 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 CYTH4Q9UIA0 394 aa17.55■□□□□ 0.4
CPSF4-201ENST00000292476 SOX1O00570 391 aaPredicted RBP17.54■□□□□ 0.4
CPSF4-201ENST00000292476 TTC4O95801 387 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 SCNN1AP37088 669 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 COPS2P61201 443 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 PLCB3Q01970 1234 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 ACTN3Q08043 901 aaPredicted RBP17.54■□□□□ 0.4
CPSF4-201ENST00000292476 IFT88Q13099 833 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 LACTB2Q53H82 288 aaPredicted RBP17.54■□□□□ 0.4
CPSF4-201ENST00000292476 CLLU1OSQ5K130 101 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 CYP4A22Q5TCH4 519 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 PHLDB2Q86SQ0 1253 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 VWCEQ96DN2 955 aa17.54■□□□□ 0.4
CPSF4-201ENST00000292476 CABS1Q96KC9 395 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms