RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 KCNJ2P63252 427 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 SOWAHAQ2M3V2 549 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 FAM47CQ5HY64 1035 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 ZNF410Q86VK4 478 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 PCDH19Q8TAB3 1148 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 SLC35F5Q8WV83 523 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 LENG1Q96BZ8 264 aaPredicted RBP19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 USP29Q9HBJ7 922 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 PCDH18Q9HCL0 1135 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 HESX1Q9UBX0 185 aa19.13■□□□□ 0.65
SHKBP1-201ENST00000291842 A8MXQ7 604 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 KBTBD13C9JR72 458 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 DYNC1LI2O43237 492 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 STRNO43815 780 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 BCAR1P56945 870 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 DCAF4L1Q3SXM0 396 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 GALNTL6Q49A17 601 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 ZNF618Q5T7W0 954 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 SLC27A1Q6PCB7 646 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 ADGRD1Q6QNK2 874 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 PNMA8AQ86V59 439 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 NT5DC4Q86YG4 428 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 MAP7D3Q8IWC1 876 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 AGGF1Q8N302 714 aaeCLIP19.12■□□□□ 0.657e-20■■■■□ 22.6
SHKBP1-201ENST00000291842 KIF2BQ8N4N8 673 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 NPLOC4Q8TAT6 608 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 DCAKDQ8WVC6 231 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 L3MBTL3Q96JM7 780 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 SENP1Q9P0U3 644 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 TRIM33Q9UPN9 1127 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 GPR32O75388 356 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 LCP1P13796 627 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 LMO2P25791 158 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 YWHAGP61981 247 aaKnown RBP eCLIP19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 FAM228AQ86W67 206 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 LRRC8CQ8TDW0 803 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 TINF2Q9BSI4 451 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 SLC4A5Q9BY07 1137 aa19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 GCOM2Q9BZD3 368 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 TRIM6Q9C030 488 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-201ENST00000291842 APOL1O14791 398 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 RECQL4O94761 1208 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 ADRA1DP25100 572 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 HDAC4P56524 1084 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 KCNJ11Q14654 390 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 SNCBQ16143 134 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 PDK4Q16654 411 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 KLHL38Q2WGJ6 581 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 BOLA3Q53S33 107 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 SMYD5Q6GMV2 418 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 TMEM110Q86TL2 294 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 ANKLE1Q8NAG6 615 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 CFAP36Q96G28 342 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 SYT17Q9BSW7 474 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 GOLGA2P5Q9HBQ8 144 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 RXFP1Q9HBX9 757 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 ALG13Q9NP73 1137 aaKnown RBP19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 TCRBV9S1A1TA0A576 114 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 GBP2P32456 591 aaPredicted RBP19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 BNIP1Q12981 228 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 ZBTB6Q15916 424 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 KBTBD12Q3ZCT8 623 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 TTC39CQ8N584 583 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 BEST2Q8NFU1 509 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 CCDC110Q8TBZ0 833 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 GTF3C2Q8WUA4 911 aaPredicted RBP19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 DHRS4Q9BTZ2 278 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 SLC17A7Q9P2U7 560 aa19.11■□□□□ 0.65
SHKBP1-201ENST00000291842 ZBED1O96006 694 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 HIC1Q14526 733 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 PDK2Q15119 407 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 STILQ15468 1287 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 C9orf57Q5W0N0 161 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 TCP10LQ8TDR4 215 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 MZB1Q8WU39 189 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 PLEKHA5Q9HAU0 1116 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 SMIM10L2AP0DMW4 78 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 SMIM10L2BP0DMW5 78 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 IBSPP21815 317 aaPredicted RBP19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 RASA2Q15283 850 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 NOTUMQ6P988 496 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 ZNF467Q7Z7K2 595 aaPredicted RBP19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 PRPF39Q86UA1 669 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 TMEM40Q8WWA1 233 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 PHACTR1Q9C0D0 580 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 RNF39Q9H2S5 420 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 ABHD16BQ9H3Z7 469 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 PPCSQ9HAB8 311 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 NR2E3Q9Y5X4 410 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 TEX264Q9Y6I9 313 aa19.1■□□□□ 0.65
SHKBP1-201ENST00000291842 IGF2BP3O00425 579 aaKnown RBP eCLIP19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 SPTLC1O15269 473 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 MGRN1O60291 552 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 FAM155BO75949 473 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 APRTP07741 180 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 CYP2C9P11712 490 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 ATP2A2P16615 1042 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 GRB14Q14449 540 aa19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 SEPT7Q16181 437 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-201ENST00000291842 DNAJB3Q8WWF6 145 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms