RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 XRCC4Q13426 336 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 MTFR1Q15390 333 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 STILQ15468 1287 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 ZNF618Q5T7W0 954 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 CYB5D1Q6P9G0 228 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 SESTD1Q86VW0 696 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 PCDH19Q8TAB3 1148 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 TMEM40Q8WWA1 233 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 KLF6Q99612 283 aaPredicted RBP20.92■□□□□ 0.94
VPS53-201ENST00000291074 USP29Q9HBJ7 922 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 SLCO1B3Q9NPD5 702 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 HESX1Q9UBX0 185 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 PRKAG3Q9UGI9 489 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 ARL2BPQ9Y2Y0 163 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 A8MXQ7 604 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 DPYSL4O14531 572 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 KCNN4O15554 427 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 TYROBPO43914 113 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 FGFR1P11362 822 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 HDAC4P56524 1084 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 FAM47CQ5HY64 1035 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 C9orf57Q5W0N0 161 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 TMEM110Q86TL2 294 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 BEST2Q8NFU1 509 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 PITPNM3Q9BZ71 974 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 TRIM6Q9C030 488 aaPredicted RBP20.91■□□□□ 0.94
VPS53-201ENST00000291074 GLTPD2A6NH11 291 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 GOLGA8RI6L899 631 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 CYP2C9P11712 490 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 SPARCL1Q14515 664 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 KCNJ11Q14654 390 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 NOTUMQ6P988 496 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 PLEKHH3Q7Z736 793 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 AGGF1Q8N302 714 aaeCLIP20.91■□□□□ 0.94
VPS53-201ENST00000291074 CCDC33Q8N5R6 958 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 PTPN18Q99952 460 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 PHACTR1Q9C0D0 580 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 C12orf65Q9H3J6 166 aaKnown RBP20.91■□□□□ 0.94
VPS53-201ENST00000291074 GOLGA2P5Q9HBQ8 144 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 RAB6BQ9NRW1 208 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 SLC45A1Q9Y2W3 748 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 LMO2P25791 158 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 RBL1P28749 1068 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 ANKRD23Q86SG2 305 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 DNAJB3Q8WWF6 145 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 FAF2Q96CS3 445 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 SENP1Q9P0U3 644 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 SMG5Q9UPR3 1016 aaKnown RBP20.91■□□□□ 0.94
VPS53-201ENST00000291074 DERAQ9Y315 318 aa20.91■□□□□ 0.94
VPS53-201ENST00000291074 KBTBD13C9JR72 458 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 APOL1O14791 398 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 SPTLC1O15269 473 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 GSTA1P08263 222 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 STIP1P31948 543 aaKnown RBP20.9■□□□□ 0.94
VPS53-201ENST00000291074 BCAR1P56945 870 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 MAP7D3Q8IWC1 876 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 FITM2Q8N6M3 262 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 DCAKDQ8WVC6 231 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 DHRS4Q9BTZ2 278 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 RNF39Q9H2S5 420 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 FAM124BQ9H5Z6 455 aaPredicted RBP20.9■□□□□ 0.94
VPS53-201ENST00000291074 LCP1P13796 627 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 DARSP14868 501 aaKnown RBP20.9■□□□□ 0.94
VPS53-201ENST00000291074 RASA2Q15283 850 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 BOLA3Q53S33 107 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 IQSEC1Q6DN90 963 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 ADGRD1Q6QNK2 874 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 LRRC52Q8N7C0 313 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 MZB1Q8WU39 189 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 KBTBD7Q8WVZ9 684 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 PIN4Q9Y237 131 aaKnown RBP20.9■□□□□ 0.94
VPS53-201ENST00000291074 SCN4AP35499 1836 aa20.9■□□□□ 0.94
VPS53-201ENST00000291074 RRN3P2A6NIE6 340 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 ZNF200P98182 395 aaPredicted RBP20.89■□□□□ 0.93
VPS53-201ENST00000291074 PDK2Q15119 407 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 ALKAL1Q6UXT8 129 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 SUGP1Q8IWZ8 645 aaKnown RBP20.89■□□□□ 0.93
VPS53-201ENST00000291074 CCDC63Q8NA47 563 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 CNTN3Q9P232 1028 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 SETSIPP0DME0 302 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 MSH2P43246 934 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 KLHL38Q2WGJ6 581 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 LVRNQ6Q4G3 990 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 ECHDC2Q86YB7 292 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 PPCSQ9HAB8 311 aa20.89■□□□□ 0.93
VPS53-201ENST00000291074 ZBED1O96006 694 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 F2P00734 622 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 NCALDP61601 193 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 YWHAGP61981 247 aaKnown RBP eCLIP20.88■□□□□ 0.93
VPS53-201ENST00000291074 GALNTL6Q49A17 601 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 ANKLE1Q8NAG6 615 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 TEKT4Q8WW24 435 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 PHTF1Q9UMS5 762 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 TEX264Q9Y6I9 313 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 ZNF638Q14966 1978 aaKnown RBP20.88■□□□□ 0.93
VPS53-201ENST00000291074 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.88■□□□□ 0.93
VPS53-201ENST00000291074 TCRBV9S1A1TA0A576 114 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 ADRA1DP25100 572 aa20.88■□□□□ 0.93
VPS53-201ENST00000291074 SOX4Q06945 474 aaPredicted RBP20.88■□□□□ 0.93
VPS53-201ENST00000291074 PDK4Q16654 411 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms