RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PITX1P78337 314 aaPredicted RBP17.32■□□□□ 0.36
VPS54-201ENST00000272322 BNIP1Q12981 228 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 CDHR3Q6ZTQ4 885 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 AGGF1Q8N302 714 aaeCLIP17.32■□□□□ 0.362e-11■■■□□ 19
VPS54-201ENST00000272322 N4BP2L2Q92802 583 aaPredicted RBP17.32■□□□□ 0.36
VPS54-201ENST00000272322 RNF39Q9H2S5 420 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 ETNK2Q9NVF9 386 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 EURLQ9NYK6 297 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 BARX2Q9UMQ3 279 aaPredicted RBP17.32■□□□□ 0.36
VPS54-201ENST00000272322 FARP1Q9Y4F1 1045 aaPredicted RBP17.32■□□□□ 0.36
VPS54-201ENST00000272322 LOC102724159A0A0B4J2E5 919 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 CREB3O43889 395 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 GHRP10912 638 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 AMPD1P23109 780 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 SESN2P58004 480 aaPredicted RBP17.32■□□□□ 0.36
VPS54-201ENST00000272322 PWP2Q15269 919 aaKnown RBP17.32■□□□□ 0.36
VPS54-201ENST00000272322 TTC7BQ86TV6 843 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 TP53INP2Q8IXH6 220 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 HACE1Q8IYU2 909 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 AGAP3Q96P47 875 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 HESX1Q9UBX0 185 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 NME7Q9Y5B8 376 aa17.32■□□□□ 0.36
VPS54-201ENST00000272322 PLD5Q8N7P1 536 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 CCNYQ8ND76 341 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 PCDH19Q8TAB3 1148 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 ACSS2Q9NR19 701 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 ZC3H7BQ9UGR2 993 aaKnown RBP17.31■□□□□ 0.36
VPS54-201ENST00000272322 TSPAN1O60635 241 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 OAS1P00973 400 aaKnown RBP17.31■□□□□ 0.36
VPS54-201ENST00000272322 RBP5P82980 135 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 TAP1Q03518 808 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 NME3Q13232 169 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 TRIM68Q6AZZ1 485 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 ARMC2Q8NEN0 867 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 LGMNQ99538 433 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 CNPY3Q9BT09 278 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 CITO14578 2027 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 PAPSS1O43252 624 aaPredicted RBP17.31■□□□□ 0.36
VPS54-201ENST00000272322 MGRN1O60291 552 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 ANP32DO95626 131 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 P4HA1P13674 534 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 OSBPP22059 807 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 ZNF143P52747 638 aaPredicted RBP17.31■□□□□ 0.36
VPS54-201ENST00000272322 ZNF268Q14587 947 aaPredicted RBP17.31■□□□□ 0.36
VPS54-201ENST00000272322 BCO2Q9BYV7 579 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 RSAD1Q9HA92 442 aa17.31■□□□□ 0.36
VPS54-201ENST00000272322 TNS1Q9HBL0 1735 aaKnown RBP17.3■□□□□ 0.36
VPS54-201ENST00000272322 C2CD4BA6NLJ0 364 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 USP12O75317 370 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 SLC25A27O95847 323 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 VDRP11473 427 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 MCCD1P59942 119 aaPredicted RBP17.3■□□□□ 0.36
VPS54-201ENST00000272322 NR1H3Q13133 447 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 GRIK4Q16099 956 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 C9orf131Q5VYM1 1079 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 NLRP9Q7RTR0 991 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 NME8Q8N427 588 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 CMASQ8NFW8 434 aaPredicted RBP17.3■□□□□ 0.36
VPS54-201ENST00000272322 DENND1AQ8TEH3 1009 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 NSMCE1Q8WV22 266 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 PCMTD2Q9NV79 361 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 PSME4Q14997 1843 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 LGR5O75473 907 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 METTL18O95568 372 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 NAA25Q14CX7 972 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 DENND5BQ6ZUT9 1274 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 TTC13Q8NBP0 860 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 RNF157Q96PX1 679 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 FAM167BQ9BTA0 163 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 LHX5Q9H2C1 402 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 PIN4Q9Y237 131 aaKnown RBP17.3■□□□□ 0.36
VPS54-201ENST00000272322 IL18RAPO95256 599 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 PFKMP08237 780 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 IFRD2Q12894 506 aaPredicted RBP17.3■□□□□ 0.36
VPS54-201ENST00000272322 HEY2Q9UBP5 337 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 GJD2Q9UKL4 321 aa17.3■□□□□ 0.36
VPS54-201ENST00000272322 TRIP11Q15643 1979 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 TYROBPO43914 113 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 ENTPD5O75356 428 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 GABBR2O75899 941 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 ATP2A2P16615 1042 aaKnown RBP17.29■□□□□ 0.36
VPS54-201ENST00000272322 ALDH3A1P30838 453 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 RCN2Q14257 317 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 PAN2Q504Q3 1202 aaKnown RBP17.29■□□□□ 0.36
VPS54-201ENST00000272322 C16orf46Q6P387 395 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 MTHFD1LQ6UB35 978 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 CCDC125Q86Z20 511 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 CYTH2Q99418 400 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 MANSC1Q9H8J5 431 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.29■□□□□ 0.36
VPS54-201ENST00000272322 ZFP69BQ9UJL9 534 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 SCN1AP35498 2009 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 FAM237BA0A1B0GVD1 139 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 APOL1O14791 398 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 EDF1O60869 148 aaKnown RBP17.29■□□□□ 0.36
VPS54-201ENST00000272322 TCEA3O75764 348 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 IL4RP24394 825 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 CDH5P33151 784 aaPredicted RBP17.29■□□□□ 0.36
VPS54-201ENST00000272322 PGGT1BP53609 377 aa17.29■□□□□ 0.36
VPS54-201ENST00000272322 PDK4Q16654 411 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms