RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 NOS2P35228 1153 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 CDR1P51861 262 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 DRG2P55039 364 aaKnown RBP17.11■□□□□ 0.33
TPM1-201ENST00000267996 ELAVL2Q12926 359 aaKnown RBP17.11■□□□□ 0.33
TPM1-201ENST00000267996 CUL1Q13616 776 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 TRADDQ15628 312 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 CDO1Q16878 200 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 SLC25A52Q3SY17 297 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 ODF2Q5BJF6 829 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 FAM171A1Q5VUB5 890 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 DUPD1Q68J44 220 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 PM20D1Q6GTS8 502 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 BHLHA9Q7RTU4 235 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 GSPT2Q8IYD1 628 aaKnown RBP17.11■□□□□ 0.33
TPM1-201ENST00000267996 DCP1BQ8IZD4 617 aaKnown RBP17.11■□□□□ 0.33
TPM1-201ENST00000267996 DEFB106AQ8N104 65 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 C1orf54Q8WWF1 131 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.11■□□□□ 0.33
TPM1-201ENST00000267996 ERP44Q9BS26 406 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 RAB17Q9H0T7 212 aa17.11■□□□□ 0.33
TPM1-201ENST00000267996 SF3B1O75533 1304 aaKnown RBP eCLIP17.11■□□□□ 0.339e-6■■■■■ 68.9
TPM1-201ENST00000267996 COL4A4P53420 1690 aaPredicted RBP17.1■□□□□ 0.33
TPM1-201ENST00000267996 OR6C75A6NL08 312 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 MAP2K7O14733 419 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 MDM4O15151 490 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 HSPA1AP0DMV8 641 aaKnown RBP17.1■□□□□ 0.33
TPM1-201ENST00000267996 HSPA1BP0DMV9 641 aaKnown RBP17.1■□□□□ 0.33
TPM1-201ENST00000267996 RABGGTBP53611 331 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 FUT10Q6P4F1 479 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 EMBQ6PCB8 327 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 DRICH1Q6PGQ1 229 aaPredicted RBP17.1■□□□□ 0.33
TPM1-201ENST00000267996 VSIG1Q86XK7 387 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 SPATA2LQ8IUW3 424 aaPredicted RBP17.1■□□□□ 0.33
TPM1-201ENST00000267996 FAM71BQ8TC56 605 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 IRGQQ8WZA9 623 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 FUBP3Q96I24 572 aaKnown RBP eCLIP17.1■□□□□ 0.33
TPM1-201ENST00000267996 NPY6RQ99463 290 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 UTP11Q9Y3A2 253 aaKnown RBP17.1■□□□□ 0.33
TPM1-201ENST00000267996 USP3Q9Y6I4 520 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 PATJQ8NI35 1801 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 TBC1D4O60343 1298 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 ZBED1O96006 694 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 FYNP06241 537 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 ECHS1P30084 290 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 KCNJ1P48048 391 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 EPHB4P54760 987 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 BCAR1P56945 870 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 NFE2Q16621 373 aaPredicted RBP17.1■□□□□ 0.33
TPM1-201ENST00000267996 OTUD1Q5VV17 481 aaPredicted RBP17.1■□□□□ 0.33
TPM1-201ENST00000267996 HFE2Q6ZVN8 426 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 BBS12Q6ZW61 710 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 CCDC105Q8IYK2 499 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 KCTD6Q8NC69 237 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 ATG4AQ8WYN0 398 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 CAVIN3Q969G5 261 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 TOP1MTQ969P6 601 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 FAM149B1Q96BN6 582 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 TRIM51Q9BSJ1 452 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 TMEM106CQ9BVX2 250 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 CWH43Q9H720 699 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 POPDC2Q9HBU9 364 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 RASAL2Q9UJF2 1139 aa17.1■□□□□ 0.33
TPM1-201ENST00000267996 YJEFN3A6XGL0 299 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 E7ENQ6 273 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 SASH3O75995 380 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 CD48P09326 243 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 OR4Q2P0C623 313 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 NNTQ13423 1086 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 PDK2Q15119 407 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 SLC39A12Q504Y0 691 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 KAZNQ674X7 775 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 ZNF280DQ6N043 979 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 MFSD5Q6N075 450 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 SYDE1Q6ZW31 735 aaPredicted RBP17.09■□□□□ 0.33
TPM1-201ENST00000267996 HDXQ7Z353 690 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 TMEM173Q86WV6 379 aaPredicted RBP17.09■□□□□ 0.33
TPM1-201ENST00000267996 ATL2Q8NHH9 583 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 BCL7CQ8WUZ0 217 aaPredicted RBP17.09■□□□□ 0.33
TPM1-201ENST00000267996 IFT81Q8WYA0 676 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 HSPH1Q92598 858 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 FAM114A2Q9NRY5 505 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 FAM53CQ9NYF3 392 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 FEZ2Q9UHY8 353 aaPredicted RBP17.09■□□□□ 0.33
TPM1-201ENST00000267996 NFU1Q9UMS0 254 aa17.09■□□□□ 0.33
TPM1-201ENST00000267996 ZNF487B1APH4 448 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 TNFRSF10BO14763 440 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 DAPK3O43293 454 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 EFCAB14O75071 495 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 UPP2O95045 317 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 USP17L7P0C7H9 530 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 SNX1Q13596 522 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 CTXN3Q4LDR2 81 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 DCAF6Q58WW2 860 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 SCYL2Q6P3W7 929 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 VSTM1Q6UX27 236 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 BEND5Q7L4P6 421 aa17.08■□□□□ 0.32
TPM1-201ENST00000267996 ZNF689Q96CS4 500 aaPredicted RBP17.08■□□□□ 0.32
TPM1-201ENST00000267996 SNRNP25Q9BV90 132 aaKnown RBP17.08■□□□□ 0.32
TPM1-201ENST00000267996 OXCT2Q9BYC2 517 aaPredicted RBP17.08■□□□□ 0.32
TPM1-201ENST00000267996 FRMD8P1Q9BZ68 369 aaPredicted RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms