RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 STRA8Q7Z7C7 330 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 PLD3Q8IV08 490 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 TNIP2Q8NFZ5 429 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 DDI1Q8WTU0 396 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 FAM162AQ96A26 154 aa11.11□□□□□ -0.63
CD44-201ENST00000263398 PRPF18Q99633 342 aaKnown RBP11.11□□□□□ -0.63
CD44-201ENST00000263398 SYNDIG1LA6NDD5 238 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 MYO1GB0I1T2 1018 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 PDE2AO00408 941 aaPredicted RBP11.1□□□□□ -0.63
CD44-201ENST00000263398 NCAM2O15394 837 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 FBXO21O94952 628 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 HLA-DPA1P20036 260 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 PSMA4P25789 261 aaKnown RBP11.1□□□□□ -0.63
CD44-201ENST00000263398 SOX11P35716 441 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 SERPINB5P36952 375 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 ELK3P41970 407 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 CPT1AP50416 773 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 SLC12A3P55017 1021 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 ARHGEF7Q14155 803 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 PGM5Q15124 567 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 TIGD7Q6NT04 549 aaPredicted RBP11.1□□□□□ -0.63
CD44-201ENST00000263398 SLC30A10Q6XR72 485 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 C3orf67Q6ZVT6 689 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 SPATA17Q96L03 361 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 RPRD1AQ96P16 312 aaPredicted RBP11.1□□□□□ -0.63
CD44-201ENST00000263398 TRPC7Q9HCX4 862 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 TMEM161AQ9NX61 479 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 SCN3BQ9NY72 215 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 NINJ2Q9NZG7 142 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 RUVBL2Q9Y230 463 aaKnown RBP11.1□□□□□ -0.63
CD44-201ENST00000263398 KANSL1LA0AUZ9 987 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 JCHAINP01591 159 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 BTKQ06187 659 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 ADRM1Q16186 407 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 MFSD7Q6UXD7 560 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 ZPBP2Q6X784 338 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 ZNF662Q6ZS27 426 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.1□□□□□ -0.63
CD44-201ENST00000263398 P3H2Q8IVL5 708 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.1□□□□□ -0.63
CD44-201ENST00000263398 DNERQ8NFT8 737 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 SLC4A9Q96Q91 983 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 DNAJC18Q9H819 358 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 ZNF446Q9NWS9 450 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 KCNH4Q9UQ05 1017 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 DRG1Q9Y295 367 aaKnown RBP11.1□□□□□ -0.63
CD44-201ENST00000263398 EML1O00423 815 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 KLRC4O43908 158 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 ATP6V1G2O95670 118 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 RBP1P09455 135 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 S100A5P33763 92 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 TTLL9Q3SXZ7 439 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 UGT3A1Q6NUS8 523 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 LRRC55Q6ZSA7 311 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 TMPRSS6Q8IU80 811 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 MSL3Q8N5Y2 521 aaKnown RBP11.1□□□□□ -0.63
CD44-201ENST00000263398 KIAA1683Q9H0B3 1180 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 MROH8Q9H579 483 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 TRMT6Q9UJA5 497 aaKnown RBP11.1□□□□□ -0.63
CD44-201ENST00000263398 TNS2Q63HR2 1409 aa11.1□□□□□ -0.63
CD44-201ENST00000263398 KDM1AO60341 852 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 TFE3P19532 575 aaPredicted RBP11.09□□□□□ -0.63
CD44-201ENST00000263398 LRRC74AQ0VAA2 488 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 BMPR2Q13873 1038 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 NFIL3Q16649 462 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 BLOC1S5Q8TDH9 187 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 TCP10LQ8TDR4 215 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 C17orf80Q9BSJ5 609 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 IDI2Q9BXS1 227 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 IARS2Q9NSE4 1012 aaKnown RBP11.09□□□□□ -0.63
CD44-201ENST00000263398 ABI2Q9NYB9 513 aaPredicted RBP11.09□□□□□ -0.63
CD44-201ENST00000263398 ASMTLO95671 621 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 CYP3A4P08684 503 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 CXCL8P10145 99 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 ST8SIA6P61647 398 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 RPL10AP62906 217 aaKnown RBP11.09□□□□□ -0.63
CD44-201ENST00000263398 BST2Q10589 180 aaKnown RBP11.09□□□□□ -0.63
CD44-201ENST00000263398 GTF2H3Q13889 308 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 CBWD6Q4V339 395 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 CBWD3Q5JTY5 395 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 CBWD5Q5RIA9 395 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 WASHC2DQ5SRD0 308 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 DDX28Q9NUL7 540 aaKnown RBP11.09□□□□□ -0.63
CD44-201ENST00000263398 BARX2Q9UMQ3 279 aaPredicted RBP11.09□□□□□ -0.63
CD44-201ENST00000263398 PRG3Q9Y2Y8 225 aaPredicted RBP11.09□□□□□ -0.63
CD44-201ENST00000263398 C2orf81A6NN90 581 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 CYB561D2O14569 222 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 CYP2F1P24903 491 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 SSTR1P30872 391 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 GLRBP48167 497 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 CLK1P49759 484 aaKnown RBP11.09□□□□□ -0.63
CD44-201ENST00000263398 SOX10P56693 466 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 LAMTOR4Q0VGL1 99 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 SGO1Q5FBB7 561 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 WDR59Q6PJI9 974 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 PTF1AQ7RTS3 328 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 ERO1BQ86YB8 467 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 MAP4K3Q8IVH8 894 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 HOMEZQ8IX15 550 aa11.09□□□□□ -0.63
CD44-201ENST00000263398 ADGRF2Q8IZF7 708 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms