RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 V9GYY5 206 aaPredicted RBP13.85□□□□□ -0.19
SLIRP-201ENST00000238688 PTPRDP23468 1912 aa13.85□□□□□ -0.19
SLIRP-201ENST00000238688 MTCL1Q9Y4B5 1905 aaKnown RBP13.85□□□□□ -0.19
SLIRP-201ENST00000238688 C2orf16Q68DN1 1984 aa13.85□□□□□ -0.19
SLIRP-201ENST00000238688 MUC6Q6W4X9 2439 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 ZNF487B1APH4 448 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 LOC730098B7Z3J9 87 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 SPTLC1O15269 473 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 FBXO21O94952 628 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 ZRANB2O95218 330 aaKnown RBP eCLIP13.84□□□□□ -0.19
SLIRP-201ENST00000238688 ZNF143P52747 638 aaPredicted RBP13.84□□□□□ -0.19
SLIRP-201ENST00000238688 KRT17Q04695 432 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 NNTQ13423 1086 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 PPP1R26Q5T8A7 1209 aaPredicted RBP13.84□□□□□ -0.19
SLIRP-201ENST00000238688 DCAF12L1Q5VU92 463 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 ANKRD54Q6NXT1 300 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 EMBQ6PCB8 327 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 DSTYKQ6XUX3 929 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 SLC26A9Q7LBE3 791 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 TMC7Q7Z402 723 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 SLC13A5Q86YT5 568 aaPredicted RBP13.84□□□□□ -0.19
SLIRP-201ENST00000238688 SCML4Q8N228 414 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 MCEEQ96PE7 176 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 TBCBQ99426 244 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 DUSP16Q9BY84 665 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 RAB17Q9H0T7 212 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 ZBP1Q9H171 429 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 PRDM16Q9HAZ2 1276 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 ENTPD7Q9NQZ7 604 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 MIOSQ9NXC5 875 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 PCYOX1Q9UHG3 505 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 CDH22Q9UJ99 828 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 PATJQ8NI35 1801 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 PLXNA3P51805 1871 aa13.84□□□□□ -0.19
SLIRP-201ENST00000238688 DOCK6Q96HP0 2047 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 DENND4AQ7Z401 1863 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 TMEM110-MUSTN1A8MSY1 372 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 NDC80O14777 642 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 SYN3O14994 580 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 DCXO43602 365 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 CLASP2O75122 1294 aaKnown RBP13.83□□□□□ -0.2
SLIRP-201ENST00000238688 PHF2O75151 1096 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 EFEMP2O95967 443 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 CALCAP01258 141 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 PTPN1P18031 435 aaKnown RBP13.83□□□□□ -0.2
SLIRP-201ENST00000238688 ALDH7A1P49419 539 aaKnown RBP13.83□□□□□ -0.2
SLIRP-201ENST00000238688 CLCN6P51797 869 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 CLCNKBP51801 687 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 DRG2P55039 364 aaKnown RBP13.83□□□□□ -0.2
SLIRP-201ENST00000238688 SLC6A3Q01959 620 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 LMNB2Q03252 620 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 C2orf54Q08AI8 447 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 ELAVL2Q12926 359 aaKnown RBP13.83□□□□□ -0.2
SLIRP-201ENST00000238688 CBX2Q14781 532 aaPredicted RBP13.83□□□□□ -0.2
SLIRP-201ENST00000238688 ODF2Q5BJF6 829 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 EFHC1Q5JVL4 640 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 DDX53Q86TM3 631 aaKnown RBP13.83□□□□□ -0.2
SLIRP-201ENST00000238688 RNF135Q8IUD6 432 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 THEM5Q8N1Q8 247 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 GRK7Q8WTQ7 553 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 AUTS2Q8WXX7 1259 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 SEC14L1Q92503 715 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 KRT35Q92764 455 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 MS4A14Q96JA4 679 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 CXCL16Q9H2A7 254 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 ACBD3Q9H3P7 528 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 RRN3Q9NYV6 651 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 PCDHB8Q9UN66 801 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 HCFC2Q9Y5Z7 792 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 IRAK3Q9Y616 596 aa13.83□□□□□ -0.2
SLIRP-201ENST00000238688 ZDBF2Q9HCK1 2354 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 ZNF189O75820 626 aaPredicted RBP13.82□□□□□ -0.2
SLIRP-201ENST00000238688 B3GAT3O94766 335 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 CXCL14O95715 111 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 RHOXF2BP0C7M4 288 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 CTSAP10619 480 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 ALADP13716 330 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 NPR3P17342 541 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 GPD1P21695 349 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 PSMA2P25787 234 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 PTPN9P43378 593 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 DNA2P51530 1060 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 SMARCB1Q12824 385 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 SMC1AQ14683 1233 aaKnown RBP13.82□□□□□ -0.2
SLIRP-201ENST00000238688 NAA30Q147X3 362 aaPredicted RBP13.82□□□□□ -0.2
SLIRP-201ENST00000238688 FAM102AQ5T9C2 384 aaPredicted RBP13.82□□□□□ -0.2
SLIRP-201ENST00000238688 LLGL2Q6P1M3 1020 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 CC2D1AQ6P1N0 951 aaPredicted RBP13.82□□□□□ -0.2
SLIRP-201ENST00000238688 DRICH1Q6PGQ1 229 aaPredicted RBP13.82□□□□□ -0.2
SLIRP-201ENST00000238688 OLFML1Q6UWY5 402 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 TTC30AQ86WT1 665 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 PSTKQ8IV42 348 aaKnown RBP13.82□□□□□ -0.2
SLIRP-201ENST00000238688 VPS52Q8N1B4 723 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 MYCBPAPQ8TBZ2 947 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 TEKT4Q8WW24 435 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 TSC1Q92574 1164 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 SMARCD1Q96GM5 515 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 TMEM169Q96HH4 297 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 SYT15Q9BQS2 421 aa13.82□□□□□ -0.2
SLIRP-201ENST00000238688 RHOXF2Q9BQY4 288 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms