RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MAN1A1P33908 653 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 BPIFB4P59827 614 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 FKBP1CQ5VVH2 108 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 FAM183BPQ6ZVS7 135 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 CCNJLQ8IV13 435 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 GBP7Q8N8V2 638 aaPredicted RBP11.15□□□□□ -0.63
USP28-201ENST00000003302 MTMR14Q8NCE2 650 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 CDT1Q9H211 546 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 PCDHGB4Q9UN71 923 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 PCDHGB5Q9Y5G0 923 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 TTC3P53804 2025 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 IGKV6D-21A0A0A0MT36 114 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 LACTBL1A8MY62 500 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 M0QYV0 167 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 TOM1L1O75674 476 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 RFPL1O75677 317 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 PIGRP01833 764 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 VTNP04004 478 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 PRKCBP05771 671 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 RTP1P59025 263 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 TMEM62Q0P6H9 643 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 BLMHQ13867 455 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 PPM1JQ5JR12 505 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 ZNF618Q5T7W0 954 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 CATSPERGQ6ZRH7 1159 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 AGBL3Q8NEM8 1001 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 PCDH19Q8TAB3 1148 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 ACAD9Q9H845 621 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 A0A1B0GVG6 124 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 KCNN4O15554 427 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 DHRS4L1P0CG22 281 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 ARSAP15289 507 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 KCNJ11Q14654 390 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 GLRA4Q5JXX5 417 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 RGS9BPQ6ZS82 235 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 RXFP2Q8WXD0 754 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 PCMTD2Q9NV79 361 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 DRG1Q9Y295 367 aaKnown RBP11.14□□□□□ -0.63
USP28-201ENST00000003302 FCHO1O14526 889 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 CAPN9O14815 690 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 STAM2O75886 525 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 TRUB2O95900 331 aaKnown RBP11.14□□□□□ -0.63
USP28-201ENST00000003302 CCDC15Q0P6D6 951 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 SETDB1Q15047 1291 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 ADGRF2Q8IZF7 708 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.14□□□□□ -0.63
USP28-201ENST00000003302 RBM15BQ8NDT2 890 aaKnown RBP11.14□□□□□ -0.63
USP28-201ENST00000003302 TRIM11Q96F44 468 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 ATXN7L3BQ96GX2 97 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 MIS12Q9H081 205 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 DPEP3Q9H4B8 488 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 POPDC2Q9HBU9 364 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 PTPRHQ9HD43 1115 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 NGRNQ9NPE2 291 aaKnown RBP11.14□□□□□ -0.63
USP28-201ENST00000003302 SERPINB4P48594 390 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 RALGPS1Q5JS13 557 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 DARS2Q6PI48 645 aaKnown RBP11.14□□□□□ -0.63
USP28-201ENST00000003302 CMASQ8NFW8 434 aaPredicted RBP11.14□□□□□ -0.63
USP28-201ENST00000003302 JDP2Q8WYK2 163 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 AZIN2Q96A70 460 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 CLMNQ96JQ2 1002 aa11.14□□□□□ -0.63
USP28-201ENST00000003302 PRR5-ARHGAP8B1AHC4 643 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 CETN2P41208 172 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 ARHGAP8P85298 464 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 THOC5Q13769 683 aaKnown RBP11.13□□□□□ -0.63
USP28-201ENST00000003302 DUOXA2Q1HG44 320 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 MAVSQ7Z434 540 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 ACVR1CQ8NER5 493 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 FAM136AQ96C01 138 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 CYTH2Q99418 400 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 SYNCQ9H7C4 482 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 PPM1HQ9ULR3 514 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 LRRC42Q9Y546 428 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 A6NHS1 94 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 CCR10P46092 362 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 TRPC3Q13507 836 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 GNPTABQ3T906 1256 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 SNX30Q5VWJ9 437 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 CAPRIN2Q6IMN6 1127 aaKnown RBP11.13□□□□□ -0.63
USP28-201ENST00000003302 CROCCP2Q86T23 111 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 ATP11CQ8NB49 1132 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 AGR3Q8TD06 166 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 MAIP1Q8WWC4 291 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 IFT122Q9HBG6 1241 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 TXLNGQ9NUQ3 528 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 GINS2Q9Y248 185 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 KCNA4P22459 653 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 TBXAS1P24557 533 aaPredicted RBP11.13□□□□□ -0.63
USP28-201ENST00000003302 MSX2P35548 267 aaPredicted RBP11.13□□□□□ -0.63
USP28-201ENST00000003302 GCKP35557 465 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 ALDH18A1P54886 795 aaKnown RBP11.13□□□□□ -0.63
USP28-201ENST00000003302 MKRN3Q13064 507 aaKnown RBP11.13□□□□□ -0.63
USP28-201ENST00000003302 TAZQ16635 292 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 TTC30AQ86WT1 665 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 WDR49Q8IV35 697 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 SLC44A1Q8WWI5 657 aa11.13□□□□□ -0.63
USP28-201ENST00000003302 CCDC78A2IDD5 438 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 PTPN4P29074 926 aa11.12□□□□□ -0.63
USP28-201ENST00000003302 POLR2BP30876 1174 aaKnown RBP11.12□□□□□ -0.63
USP28-201ENST00000003302 SKIV2L2P42285 1042 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms