RNA–Protein interactions for RNA: ENST00000640916.1

SCARB2-226, Transcript of scavenger receptor class B member 2, humanhuman

TSL 2

Gene SCARB2, Length 689 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-226ENST00000640916 BRWD3Q6RI45 1802 aa12.9□□□□□ -0.34
SCARB2-226ENST00000640916 PTCH1Q13635 1447 aa12.9□□□□□ -0.34
SCARB2-226ENST00000640916 CHIC2Q9UKJ5 165 aa12.9□□□□□ -0.34
SCARB2-226ENST00000640916 MARF1Q9Y4F3 1742 aaKnown RBP12.9□□□□□ -0.34
SCARB2-226ENST00000640916 SOS2Q07890 1332 aaPredicted RBP12.89□□□□□ -0.35
SCARB2-226ENST00000640916 DEFB132Q7Z7B7 95 aa12.89□□□□□ -0.35
SCARB2-226ENST00000640916 ANKRD30AQ9BXX3 1397 aa12.89□□□□□ -0.35
SCARB2-226ENST00000640916 E9PCH4 1651 aa12.89□□□□□ -0.35
SCARB2-226ENST00000640916 ADGRL3Q9HAR2 1447 aa12.88□□□□□ -0.35
SCARB2-226ENST00000640916 APLP2Q06481 763 aa12.88□□□□□ -0.35
SCARB2-226ENST00000640916 C1orf167Q5SNV9 1468 aa12.88□□□□□ -0.35
SCARB2-226ENST00000640916 BLMP54132 1417 aaPredicted RBP12.88□□□□□ -0.35
SCARB2-226ENST00000640916 METP08581 1390 aa12.87□□□□□ -0.35
SCARB2-226ENST00000640916 CHGAP10645 457 aaKnown RBP12.87□□□□□ -0.35
SCARB2-226ENST00000640916 GLI3P10071 1580 aa12.86□□□□□ -0.35
SCARB2-226ENST00000640916 MYOM2P54296 1465 aa12.86□□□□□ -0.35
SCARB2-226ENST00000640916 ADGRL2O95490 1459 aa12.85□□□□□ -0.35
SCARB2-226ENST00000640916 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.85□□□□□ -0.35
SCARB2-226ENST00000640916 GJD4Q96KN9 370 aaPredicted RBP12.85□□□□□ -0.35
SCARB2-226ENST00000640916 ORAI2Q96SN7 254 aa12.85□□□□□ -0.35
SCARB2-226ENST00000640916 VPS8Q8N3P4 1428 aa12.85□□□□□ -0.35
SCARB2-226ENST00000640916 SPHKAPQ2M3C7 1700 aa12.83□□□□□ -0.36
SCARB2-226ENST00000640916 ANKRD50Q9ULJ7 1429 aa12.82□□□□□ -0.36
SCARB2-226ENST00000640916 HRCP23327 699 aa12.82□□□□□ -0.36
SCARB2-226ENST00000640916 CACNB1Q02641 598 aaPredicted RBP12.82□□□□□ -0.36
SCARB2-226ENST00000640916 IQGAP3Q86VI3 1631 aa12.81□□□□□ -0.36
SCARB2-226ENST00000640916 RALGAPBQ86X10 1494 aa12.81□□□□□ -0.36
SCARB2-226ENST00000640916 PSDA5PKW4 1024 aaPredicted RBP12.8□□□□□ -0.36
SCARB2-226ENST00000640916 SLIT2O94813 1529 aa12.79□□□□□ -0.36
SCARB2-226ENST00000640916 PXDNQ92626 1479 aa12.78□□□□□ -0.36
SCARB2-226ENST00000640916 ZNF219Q9P2Y4 722 aaPredicted RBP12.78□□□□□ -0.36
SCARB2-226ENST00000640916 UNC5CLQ8IV45 518 aa12.76□□□□□ -0.37
SCARB2-226ENST00000640916 ONECUT3O60422 494 aaPredicted RBP12.75□□□□□ -0.37
SCARB2-226ENST00000640916 ROBO2Q9HCK4 1378 aa12.75□□□□□ -0.37
SCARB2-226ENST00000640916 CAPN15O75808 1086 aa12.74□□□□□ -0.37
SCARB2-226ENST00000640916 SEPT12Q8IYM1 358 aa12.74□□□□□ -0.37
SCARB2-226ENST00000640916 NEXMIFQ5QGS0 1516 aa12.73□□□□□ -0.37
SCARB2-226ENST00000640916 SF3B2Q13435 895 aaKnown RBP12.73□□□□□ -0.37
SCARB2-226ENST00000640916 PRAG1Q86YV5 1406 aa12.72□□□□□ -0.37
SCARB2-226ENST00000640916 DSG3P32926 999 aa12.72□□□□□ -0.37
SCARB2-226ENST00000640916 XPCQ01831 940 aaPredicted RBP12.71□□□□□ -0.37
SCARB2-226ENST00000640916 USP32Q8NFA0 1604 aa12.7□□□□□ -0.38
SCARB2-226ENST00000640916 NPHP3Q7Z494 1330 aa12.7□□□□□ -0.38
SCARB2-226ENST00000640916 YY1P25490 414 aa12.7□□□□□ -0.38
SCARB2-226ENST00000640916 PLCH1Q4KWH8 1693 aa12.7□□□□□ -0.38
SCARB2-226ENST00000640916 NWD2Q9ULI1 1742 aa12.69□□□□□ -0.38
SCARB2-226ENST00000640916 FOXO3O43524 673 aa12.69□□□□□ -0.38
SCARB2-226ENST00000640916 R3HDM1Q15032 1099 aaKnown RBP12.69□□□□□ -0.38
SCARB2-226ENST00000640916 KRT27Q7Z3Y8 459 aa12.69□□□□□ -0.38
SCARB2-226ENST00000640916 BAG6P46379 1132 aa12.68□□□□□ -0.38
SCARB2-226ENST00000640916 EN1Q05925 392 aaPredicted RBP12.68□□□□□ -0.38
SCARB2-226ENST00000640916 VPS72Q15906 364 aa12.68□□□□□ -0.38
SCARB2-226ENST00000640916 ESCO1Q5FWF5 840 aa12.68□□□□□ -0.38
SCARB2-226ENST00000640916 CDC42BPGQ6DT37 1551 aa12.68□□□□□ -0.38
SCARB2-226ENST00000640916 RGPD1P0DJD0 1748 aa12.68□□□□□ -0.38
SCARB2-226ENST00000640916 TNS1Q9HBL0 1735 aaKnown RBP12.68□□□□□ -0.38
SCARB2-226ENST00000640916 ZNF326Q5BKZ1 582 aaKnown RBP12.67□□□□□ -0.38
SCARB2-226ENST00000640916 CLTCL1P53675 1640 aa12.66□□□□□ -0.38
SCARB2-226ENST00000640916 SPATA31A3Q5VYP0 1347 aa12.66□□□□□ -0.38
SCARB2-226ENST00000640916 HFM1A2PYH4 1435 aa12.65□□□□□ -0.38
SCARB2-226ENST00000640916 DISP2A7MBM2 1401 aa12.65□□□□□ -0.38
SCARB2-226ENST00000640916 NUP155O75694 1391 aa12.65□□□□□ -0.38
SCARB2-226ENST00000640916 ABCA3Q99758 1704 aa12.65□□□□□ -0.38
SCARB2-226ENST00000640916 NRAPQ86VF7 1730 aa12.64□□□□□ -0.39
SCARB2-226ENST00000640916 KIF1BO60333 1816 aa12.63□□□□□ -0.39
SCARB2-226ENST00000640916 LOC105371045A0A1W2PR82 267 aa12.63□□□□□ -0.39
SCARB2-226ENST00000640916 FAM50AQ14320 339 aaKnown RBP12.63□□□□□ -0.39
SCARB2-226ENST00000640916 FAM182BQ5T319 152 aa12.62□□□□□ -0.39
SCARB2-226ENST00000640916 CABLES1Q8TDN4 633 aa12.62□□□□□ -0.39
SCARB2-226ENST00000640916 RGPD8O14715 1765 aaPredicted RBP12.61□□□□□ -0.39
SCARB2-226ENST00000640916 ROCK1Q13464 1354 aa12.61□□□□□ -0.39
SCARB2-226ENST00000640916 EZH2Q15910 746 aaKnown RBP12.61□□□□□ -0.39
SCARB2-226ENST00000640916 NAIPQ13075 1403 aa12.61□□□□□ -0.39
SCARB2-226ENST00000640916 FMN2Q9NZ56 1722 aa12.6□□□□□ -0.39
SCARB2-226ENST00000640916 LRPPRCP42704 1394 aaKnown RBP12.6□□□□□ -0.39
SCARB2-226ENST00000640916 FAM83GA6ND36 823 aa12.6□□□□□ -0.39
SCARB2-226ENST00000640916 CAMKK2Q96RR4 588 aa12.6□□□□□ -0.39
SCARB2-226ENST00000640916 KIF1AQ12756 1690 aa12.59□□□□□ -0.39
SCARB2-226ENST00000640916 NUTM2FA1L443 756 aa12.59□□□□□ -0.39
SCARB2-226ENST00000640916 FAM98CQ17RN3 349 aaKnown RBP12.59□□□□□ -0.39
SCARB2-226ENST00000640916 RREB1Q92766 1687 aa12.58□□□□□ -0.4
SCARB2-226ENST00000640916 THSD7AQ9UPZ6 1657 aa12.58□□□□□ -0.4
SCARB2-226ENST00000640916 CAMTA1Q9Y6Y1 1673 aa12.58□□□□□ -0.4
SCARB2-226ENST00000640916 KRT28Q7Z3Y7 464 aa12.58□□□□□ -0.4
SCARB2-226ENST00000640916 CCDC9Q9Y3X0 531 aaKnown RBP12.58□□□□□ -0.4
SCARB2-226ENST00000640916 PPLO60437 1756 aa12.58□□□□□ -0.4
SCARB2-226ENST00000640916 NUP188Q5SRE5 1749 aa12.57□□□□□ -0.4
SCARB2-226ENST00000640916 CCDC144AA2RUR9 1427 aa12.57□□□□□ -0.4
SCARB2-226ENST00000640916 TNS3Q68CZ2 1445 aa12.57□□□□□ -0.4
SCARB2-226ENST00000640916 IFFO2Q5TF58 517 aa12.57□□□□□ -0.4
SCARB2-226ENST00000640916 WAPLQ7Z5K2 1190 aa12.57□□□□□ -0.4
SCARB2-226ENST00000640916 VGFO15240 615 aaPredicted RBP12.56□□□□□ -0.4
SCARB2-226ENST00000640916 POLA2Q14181 598 aa12.56□□□□□ -0.4
SCARB2-226ENST00000640916 PLEKHH1Q9ULM0 1364 aa12.55□□□□□ -0.4
SCARB2-226ENST00000640916 TECPR2O15040 1411 aa12.54□□□□□ -0.4
SCARB2-226ENST00000640916 ABCB7O75027 752 aa12.54□□□□□ -0.4
SCARB2-226ENST00000640916 A0A0G2JS52 829 aa12.53□□□□□ -0.4
SCARB2-226ENST00000640916 MYT1Q01538 1121 aa12.53□□□□□ -0.4
SCARB2-226ENST00000640916 KNDC1Q76NI1 1749 aa12.53□□□□□ -0.4
SCARB2-226ENST00000640916 IFT172Q9UG01 1749 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms