RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CRBNQ96SW2 442 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 MPHOSPH8Q99549 860 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 MYO1BO43795 1136 aa6.23□□□□□ -1.41
SCN1A-218ENST00000640036 ST5P78524 1137 aa6.22□□□□□ -1.41
SCN1A-218ENST00000640036 WDR78Q5VTH9 848 aa6.22□□□□□ -1.41
SCN1A-218ENST00000640036 APBB1O00213 710 aa6.22□□□□□ -1.41
SCN1A-218ENST00000640036 PLIN1O60240 522 aa6.22□□□□□ -1.41
SCN1A-218ENST00000640036 APPP05067 770 aa6.22□□□□□ -1.41
SCN1A-218ENST00000640036 PARP3Q9Y6F1 533 aa6.22□□□□□ -1.41
SCN1A-218ENST00000640036 RAB3GAP2Q9H2M9 1393 aa6.22□□□□□ -1.41
SCN1A-218ENST00000640036 TMEM132EQ6IEE7 984 aa6.22□□□□□ -1.41
SCN1A-218ENST00000640036 ZNF219Q9P2Y4 722 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-218ENST00000640036 GOLGA6L4A6NEF3 574 aa6.22□□□□□ -1.41
SCN1A-218ENST00000640036 DIAPH1O60610 1272 aaKnown RBP6.22□□□□□ -1.41
SCN1A-218ENST00000640036 CHAF1AQ13111 956 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-218ENST00000640036 TRPC5Q9UL62 973 aaPredicted RBP6.21□□□□□ -1.41
SCN1A-218ENST00000640036 RPGRIP1LQ68CZ1 1315 aa6.21□□□□□ -1.41
SCN1A-218ENST00000640036 MPRIPQ6WCQ1 1025 aa6.21□□□□□ -1.42
SCN1A-218ENST00000640036 APBA3O96018 575 aa6.21□□□□□ -1.42
SCN1A-218ENST00000640036 AIMP1Q12904 312 aaKnown RBP6.21□□□□□ -1.42
SCN1A-218ENST00000640036 RTEL1-TNFRSF6BF6WH68 1400 aa6.21□□□□□ -1.42
SCN1A-218ENST00000640036 TMEM132AQ24JP5 1023 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 CCDC61Q9Y6R9 512 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 MPHOSPH10O00566 681 aaKnown RBP6.2□□□□□ -1.42
SCN1A-218ENST00000640036 SLC3A2P08195 630 aaKnown RBP6.2□□□□□ -1.42
SCN1A-218ENST00000640036 CHMP4CQ96CF2 233 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 QTRT2Q9H974 415 aaKnown RBP6.2□□□□□ -1.42
SCN1A-218ENST00000640036 RFX1P22670 979 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 CPLX2Q6PUV4 134 aaKnown RBP6.2□□□□□ -1.42
SCN1A-218ENST00000640036 GRIN2AQ12879 1464 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 VPS8Q8N3P4 1428 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 CNTLNQ9NXG0 1405 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 ZNF530Q6P9A1 599 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-218ENST00000640036 PHF14O94880 888 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 NBR1Q14596 966 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 CNNM1Q9NRU3 951 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 TSPYL4Q9UJ04 414 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 ASXL2Q76L83 1435 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 A0A087WZG4 1122 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 KIAA2012Q0VF49 1180 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 TIMELESSQ9UNS1 1208 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 OGFOD1Q8N543 542 aa6.2□□□□□ -1.42
SCN1A-218ENST00000640036 PAF1Q8N7H5 531 aa6.19□□□□□ -1.42
SCN1A-218ENST00000640036 CEP89Q96ST8 783 aa6.19□□□□□ -1.42
SCN1A-218ENST00000640036 ERICH2A1L162 156 aa6.19□□□□□ -1.42
SCN1A-218ENST00000640036 TRDNQ13061 729 aa6.19□□□□□ -1.42
SCN1A-218ENST00000640036 CFAP65Q6ZU64 1925 aaKnown RBP6.19□□□□□ -1.42
SCN1A-218ENST00000640036 ATP2B2Q01814 1243 aa6.19□□□□□ -1.42
SCN1A-218ENST00000640036 G3BP1Q13283 466 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCN1A-218ENST00000640036 PNISRQ8TF01 805 aaKnown RBP6.19□□□□□ -1.42
SCN1A-218ENST00000640036 SIN3AQ96ST3 1273 aa6.19□□□□□ -1.42
SCN1A-218ENST00000640036 BECN1Q14457 450 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 CDCA7Q9BWT1 371 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-218ENST00000640036 KIF3AQ9Y496 699 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 TRIM6-TRIM34B2RNG4 842 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 TBC1D2BQ9UPU7 963 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 NCOA2Q15596 1464 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 ANKIB1Q9P2G1 1089 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 HDAC9Q9UKV0 1011 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 C6orf229H3BNL8 230 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 FYB1O15117 783 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 IGHMBP2P38935 993 aaKnown RBP6.18□□□□□ -1.42
SCN1A-218ENST00000640036 NECTIN2Q92692 538 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 IQGAP2Q13576 1575 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 CUX1P39880 1505 aa6.18□□□□□ -1.42
SCN1A-218ENST00000640036 CERKQ8TCT0 537 aa6.17□□□□□ -1.42
SCN1A-218ENST00000640036 PTCD1O75127 700 aaKnown RBP6.17□□□□□ -1.42
SCN1A-218ENST00000640036 VTI1AQ96AJ9 217 aa6.17□□□□□ -1.42
SCN1A-218ENST00000640036 TROQ12816 1431 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-218ENST00000640036 ANKRD50Q9ULJ7 1429 aa6.17□□□□□ -1.42
SCN1A-218ENST00000640036 TEX13AQ9BXU3 409 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-218ENST00000640036 CALRP27797 417 aaKnown RBP6.17□□□□□ -1.42
SCN1A-218ENST00000640036 RTCBQ9Y3I0 505 aaKnown RBP6.17□□□□□ -1.42
SCN1A-218ENST00000640036 FLAD1Q8NFF5 587 aa6.17□□□□□ -1.42
SCN1A-218ENST00000640036 HSP90AB3PQ58FF7 597 aa6.17□□□□□ -1.42
SCN1A-218ENST00000640036 EIF6P56537 245 aaKnown RBP6.16□□□□□ -1.42
SCN1A-218ENST00000640036 FKBP5Q13451 457 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-218ENST00000640036 UHRF1BP1LA0JNW5 1464 aa6.16□□□□□ -1.42
SCN1A-218ENST00000640036 RALBP1Q15311 655 aa6.16□□□□□ -1.42
SCN1A-218ENST00000640036 HTATSF1O43719 755 aaKnown RBP6.16□□□□□ -1.42
SCN1A-218ENST00000640036 SLF2Q8IX21 1173 aa6.16□□□□□ -1.42
SCN1A-218ENST00000640036 ERICH6BQ5W0A0 696 aa6.16□□□□□ -1.42
SCN1A-218ENST00000640036 NOL8Q76FK4 1167 aaKnown RBP6.16□□□□□ -1.42
SCN1A-218ENST00000640036 MPHOSPH6Q99547 160 aaKnown RBP6.16□□□□□ -1.42
SCN1A-218ENST00000640036 FBXO31Q5XUX0 539 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-218ENST00000640036 ATF7IPQ6VMQ6 1270 aa6.15□□□□□ -1.42
SCN1A-218ENST00000640036 NUDT16Q96DE0 195 aaKnown RBP6.15□□□□□ -1.42
SCN1A-218ENST00000640036 SLAIN2Q9P270 581 aa6.15□□□□□ -1.42
SCN1A-218ENST00000640036 WDR7Q9Y4E6 1490 aa6.15□□□□□ -1.42
SCN1A-218ENST00000640036 DDX46Q7L014 1031 aaKnown RBP6.15□□□□□ -1.42
SCN1A-218ENST00000640036 ITPRIPQ8IWB1 547 aa6.15□□□□□ -1.42
SCN1A-218ENST00000640036 NEUROD6Q96NK8 337 aa6.15□□□□□ -1.42
SCN1A-218ENST00000640036 CCDC87Q9NVE4 849 aa6.15□□□□□ -1.42
SCN1A-218ENST00000640036 ZNF644Q9H582 1327 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-218ENST00000640036 ZNF408Q9H9D4 720 aa6.15□□□□□ -1.42
SCN1A-218ENST00000640036 ANKRD30BQ9BXX2 1392 aa6.15□□□□□ -1.43
SCN1A-218ENST00000640036 CCDC57Q2TAC2 916 aa6.15□□□□□ -1.43
SCN1A-218ENST00000640036 SETDB2Q96T68 719 aa6.15□□□□□ -1.43
SCN1A-218ENST00000640036 WWC3Q9ULE0 1092 aa6.15□□□□□ -1.43
SCN1A-218ENST00000640036 HECW1Q76N89 1606 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms